RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 EML4Q9HC35 981 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NEK6Q9HC98 313 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 C8orf4Q9NR00 106 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MORF4L1Q9UBU8 362 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 FBXO40Q9UH90 709 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ANAPC2Q9UJX6 822 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MTF2Q9Y483 593 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PCDHGA3Q9Y5H0 932 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MYO18AQ92614 2054 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PTGES3LE9PB15 166 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CCRL2O00421 344 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 NRP1O14786 923 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 AREL1O15033 823 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SNX2O60749 519 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 INHBBP09529 407 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 MBL2P11226 248 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ELK4P28324 431 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 IST1P53990 364 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 WNT7BP56706 349 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 GBE1Q04446 702 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 VAC14Q08AM6 782 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ILF2Q12905 390 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SH3PXD2AQ5TCZ1 1133 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FSTL4Q6MZW2 842 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FAM117BQ6P1L5 589 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PRMT9Q6P2P2 845 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RNF135Q8IUD6 432 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 KIAA0319LQ8IZA0 1049 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 OR13F1Q8NGS4 319 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SNRNP25Q9BV90 132 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 LHPPQ9H008 270 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 HPS4Q9NQG7 708 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FAM49BQ9NUQ9 324 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 XPR1Q9UBH6 696 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 A0A0A0MRY4 1105 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ABCB7O75027 752 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ENTPD3O75355 529 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CRCPO75575 148 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 UGT2B4P06133 528 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PSAPP07602 524 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CHRNB1P11230 501 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 NCAM1P13591 858 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 HNRNPLP14866 589 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 STMN1P16949 149 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PSMB4P28070 264 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 DEFA1P59665 94 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 DEFA3P59666 94 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 IL1RL1Q01638 556 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ENPEPQ07075 957 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 BNIP2Q12982 314 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 EMC2Q15006 297 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SLC36A3Q495N2 470 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 STK32CQ86UX6 486 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FAM160B2Q86V87 743 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 LRRC49Q8IUZ0 686 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 VPS39Q96JC1 886 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SPATA13Q96N96 652 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 DOK1Q99704 481 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PSD2Q9BQI7 771 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 BDH2Q9BUT1 245 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 COA1Q9GZY4 146 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ANKRD6Q9Y2G4 727 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 TCAF1Q9Y4C2 921 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 UTRNP46939 3433 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF541Q9H0D2 1346 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SYNJ2BP-COX16A0A087WUM0 186 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 TCRBV5S1A1TA0A578 114 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 AQP12BA6NM10 295 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 G3V2L1 256 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RNF103O00237 685 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 GRID2O43424 1007 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 NUAK1O60285 661 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 USP12O75317 370 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 GCATO75600 419 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 RSL1D1O76021 490 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SNAP29O95721 258 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CCDC159P0C7I6 412 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CDH1P12830 882 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 MLNP12872 115 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PSMB9P28065 219 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 PRKCEQ02156 737 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CNTN2Q02246 1040 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CLCQ05315 142 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 GRSF1Q12849 480 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 CAMK2BQ13554 666 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SEMA5AQ13591 1074 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 FRG1Q14331 258 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 SPCS2Q15005 226 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 TAZQ16635 292 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 UGT3A1Q6NUS8 523 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 KIAA0408Q6ZU52 694 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 C15orf52Q6ZUT6 534 aaKnown RBP6.29□□□□□ -1.4
VPS13D-209ENST00000487188 BTLAQ7Z6A9 289 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 KCNMB4Q86W47 210 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 AQP12AQ8IXF9 295 aa6.29□□□□□ -1.4
VPS13D-209ENST00000487188 WDTC1Q8N5D0 677 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms