RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 MIPOL1Q8TD10 442 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PBXIP1Q96AQ6 731 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 LIN28AQ9H9Z2 209 aaKnown RBP12.32□□□□□ -0.44
COL3A1-206ENST00000487010 CLK4Q9HAZ1 481 aaKnown RBP12.32□□□□□ -0.44
COL3A1-206ENST00000487010 DUS2Q9NX74 493 aaKnown RBP12.32□□□□□ -0.44
COL3A1-206ENST00000487010 TMEM181Q9P2C4 612 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 SLC8A2Q9UPR5 921 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 A0A0G2JLL6 359 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SMIM28A0A1B0GU29 152 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 NEMP2A6NFY4 417 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ASB14A6NK59 587 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 H3BRB1 525 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 CACNG3O60359 315 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ARSAP15289 507 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 WARSP23381 471 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 EPHX2P34913 555 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 KPNA2P52292 529 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 GJA9P57773 515 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TAS2R39P59534 338 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 C1QTNF8P60827 252 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 PPIL2Q13356 520 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SV2CQ496J9 727 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 NHSL2Q5HYW2 709 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SAMD4BQ5PRF9 694 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 IRAK1BP1Q5VVH5 260 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 FAM45BPQ6NSW5 357 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 PPP4R4Q6NUP7 873 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ESRP1Q6NXG1 681 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 C8orf82Q6P1X6 216 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 DHRS4L2Q6PKH6 230 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ZBTB49Q6ZSB9 765 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ARMCX2Q7L311 632 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 PRRT2Q7Z6L0 340 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 AFAP1L2Q8N4X5 818 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 FIBCD1Q8N539 461 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 FAM45AQ8TCE6 357 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 PPP1R14BQ96C90 147 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ELMO2Q96JJ3 720 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TBL1YQ9BQ87 522 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ADAMTS10Q9H324 1103 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TUT1Q9H6E5 874 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TNFRSF12AQ9NP84 129 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 CCDC167Q9P0B6 97 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 CROTQ9UKG9 612 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 GINS2Q9Y248 185 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SNX10Q9Y5X0 201 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 CSADQ9Y600 493 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 POLR2AP24928 1970 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 NRCAMQ92823 1304 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 YJEFN3A6XGL0 299 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 MRASO14807 208 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 IMPDH2P12268 514 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 BMP2P12643 396 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ARNTP27540 789 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 MAP3K7CLP57077 242 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TMEM62Q0P6H9 643 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TMED1Q13445 227 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 POU6F1Q14863 301 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 PPP1R3AQ16821 1122 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ARL13BQ3SXY8 428 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TAPT1Q6NXT6 567 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 NOTUMQ6P988 496 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 KLHL35Q6PF15 583 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 HACD2Q6Y1H2 254 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SPATA22Q8NHS9 363 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 USP33Q8TEY7 942 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SLC16A10Q8TF71 515 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TFAP2CQ92754 450 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 TSGA13Q96PP4 275 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 RANBP9Q96S59 729 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 SLC25A23Q9BV35 468 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 ULBP1Q9BZM6 244 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 CDHR5Q9HBB8 845 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 GOLGA2P5Q9HBQ8 144 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 EML4Q9HC35 981 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 IGSF5Q9NSI5 407 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 KLK14Q9P0G3 267 aa12.31□□□□□ -0.44
COL3A1-206ENST00000487010 AAR2Q9Y312 384 aaKnown RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 HEMK1Q9Y5R4 338 aaPredicted RBP12.31□□□□□ -0.44
COL3A1-206ENST00000487010 UNCXA6NJT0 531 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 SOCS2O14508 198 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 NRP2O60462 931 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 GPC4O75487 556 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 TIPRLO75663 272 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 SRP72O76094 671 aaKnown RBP12.3□□□□□ -0.44
COL3A1-206ENST00000487010 CKMT2P17540 419 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 SLC1A2P43004 574 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 CD151P48509 253 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 CDH15P55291 814 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 DAOAP59103 153 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 CCNA1P78396 465 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 PFKPQ01813 784 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 PRKCQQ04759 706 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 LAYNQ6UX15 382 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 DHFR2Q86XF0 187 aa12.3□□□□□ -0.44
COL3A1-206ENST00000487010 RBM12BQ8IXT5 1001 aaKnown RBP12.3□□□□□ -0.44
COL3A1-206ENST00000487010 C2CD4AQ8NCU7 369 aaPredicted RBP12.3□□□□□ -0.44
COL3A1-206ENST00000487010 PPHLN1Q8NEY8 458 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms