RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CA4P22748 312 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 PSMD8P48556 350 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 LMAN1P49257 510 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 DGKEP52429 567 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 COPAP53621 1224 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 WNT3AP56704 352 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 SLC7A5Q01650 507 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 SATB1Q01826 763 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 TRAF2Q12933 501 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 MTAPQ13126 283 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 MPP3Q13368 585 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 SEMA5AQ13591 1074 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 SLC14A2Q15849 920 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 PCSK7Q16549 785 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 POM121L1PQ3SYA9 428 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 GLE1Q53GS7 698 aaKnown RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 SYCP2LQ5T4T6 812 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 FAM46CQ5VWP2 391 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 ZNF776Q68DI1 518 aaPredicted RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 CCDC70Q6NSX1 233 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 KDELC1Q6UW63 502 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 KDELC2Q7Z4H8 507 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 TMPRSS6Q8IU80 811 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 IPMKQ8NFU5 416 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 PDCD6IPQ8WUM4 868 aaKnown RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 TADA1Q96BN2 335 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 ZNF641Q96N77 438 aaPredicted RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 KLHL32Q96NJ5 620 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 ERP44Q9BS26 406 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 IER2Q9BTL4 223 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 OSBPL1AQ9BXW6 950 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 RAB17Q9H0T7 212 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 CD248Q9HCU0 757 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 C2orf42Q9NWW7 574 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 DLGAP2Q9P1A6 1054 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 SARDHQ9UL12 918 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 CHKBQ9Y259 395 aa12.36□□□□□ -0.43
SDC1-206ENST00000482879 UTP11Q9Y3A2 253 aaKnown RBP12.36□□□□□ -0.43
SDC1-206ENST00000482879 NUMA1Q14980 2115 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 TRAFD1O14545 582 aaPredicted RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 HTRA2O43464 458 aaPredicted RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 SOCS5O75159 536 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 ALDH1A2O94788 518 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 APRTP07741 180 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 IVDP26440 423 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 SLC8A1P32418 973 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 TNNT3P45378 269 aaPredicted RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 CXCL12P48061 93 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 RPS14P62263 151 aaKnown RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 CDK18Q07002 472 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 SPARCL1Q14515 664 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 CST6Q15828 149 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 ZNF805Q5CZA5 627 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 TEX35Q5T0J7 233 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 CFAP58Q5T655 872 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 ARMC12Q5T9G4 340 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 CACUL1Q86Y37 369 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 KLHDC8BQ8IXV7 354 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 TSTD1Q8NFU3 115 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 HMGB4Q8WW32 186 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 VOPP1Q96AW1 172 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 SIPA1Q96FS4 1042 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 IFT43Q96FT9 208 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 MRGPRX2Q96LB1 330 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 HINFPQ9BQA5 517 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 FICDQ9BVA6 458 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 COL25A1Q9BXS0 654 aaPredicted RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 MKRN2Q9H000 416 aaKnown RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 SLC6A17Q9H1V8 727 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 DPH5Q9H2P9 285 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 LRRC40Q9H9A6 602 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 TPX2Q9ULW0 747 aaKnown RBP12.35□□□□□ -0.43
SDC1-206ENST00000482879 SNX24Q9Y343 169 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 PCDHB9Q9Y5E1 797 aa12.35□□□□□ -0.43
SDC1-206ENST00000482879 ERI2A8K979 691 aaKnown RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 DNALI1O14645 258 aaPredicted RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 MID1O15344 667 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 HEXIM1O94992 359 aaKnown RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 PGLSO95336 258 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 AP2A1O95782 977 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 ADH1BP00325 375 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 AGTP01019 485 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 DNTTP04053 509 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 PDHA1P08559 390 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 RHOXF2BP0C7M4 288 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 GABRG2P18507 467 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 C5AR1P21730 350 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 CCR3P51677 355 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 IZUMO3Q5VZ72 239 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 DUPD1Q68J44 220 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 KCTD11Q693B1 232 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 KIAA1324Q6UXG2 1013 aaKnown RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 BMP8AQ7Z5Y6 402 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 PCGF5Q86SE9 256 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 PPIL6Q8IXY8 311 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 PGBD3Q8N328 593 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 FBXL6Q8N531 539 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 SLC25A41Q8N5S1 370 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 CPT1BQ92523 772 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms