RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RPL14P50914 215 aaKnown RBP12.33□□□□□ -0.44
PTPRF-212ENST00000477970 SERINC3Q13530 473 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 NEPROQ6NW34 567 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 AAGABQ6PD74 315 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 ADGRG6Q86SQ4 1221 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 SLC41A1Q8IVJ1 513 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 KIRREL3Q8IZU9 778 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 FSTL5Q8N475 847 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-212ENST00000477970 ACTRT2Q8TDY3 377 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 WDR60Q8WVS4 1066 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 SCG3Q8WXD2 468 aaKnown RBP12.33□□□□□ -0.44
PTPRF-212ENST00000477970 CCDC126Q96EE4 140 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 TSPAN17Q96FV3 270 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 MRPL46Q9H2W6 279 aaKnown RBP12.33□□□□□ -0.44
PTPRF-212ENST00000477970 MFSD1Q9H3U5 465 aa12.33□□□□□ -0.44
PTPRF-212ENST00000477970 RUVBL2Q9Y230 463 aaKnown RBP12.33□□□□□ -0.44
PTPRF-212ENST00000477970 ENPP3O14638 875 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 HDAC3O15379 428 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 VNN2O95498 520 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PBX3P40426 434 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 MPP1Q00013 466 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 FBXL22Q6P050 247 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PGM2L1Q6PCE3 622 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 DENND6AQ8IWF6 608 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 ARRDC2Q8TBH0 407 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 MRPL9Q9BYD2 267 aaKnown RBP12.32□□□□□ -0.44
PTPRF-212ENST00000477970 SP110Q9HB58 689 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 MARCH2Q9P0N8 246 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 A0A088AWK7 358 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PMPCBO75439 489 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 EFEMP2O95967 443 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 ATP6V1C1P21283 382 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 GRIA4P48058 902 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 KDSRQ06136 332 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 GALNT1Q10472 559 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-212ENST00000477970 HERC3Q15034 1050 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 CNGA3Q16281 694 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 ALFQ53S48 1182 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 TMCO4Q5TGY1 634 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 SLC39A5Q6ZMH5 540 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 CEP97Q8IW35 865 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 GPR150Q8NGU9 434 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 FBXO27Q8NI29 283 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 STMN2Q93045 179 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 FEM1CQ96JP0 617 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 RTKNQ9BST9 563 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PDFQ9HBH1 243 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 SLC2A6Q9UGQ3 507 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 FKBP6O75344 327 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 GMPRP36959 345 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 SATB1Q01826 763 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 NSUN2Q08J23 767 aaKnown RBP eCLIP12.32□□□□□ -0.44
PTPRF-212ENST00000477970 EFEMP1Q12805 493 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 BFSP2Q13515 415 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PSMD5Q16401 504 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 CFAP157Q5JU67 520 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 FAM171A1Q5VUB5 890 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 SETD3Q86TU7 594 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-212ENST00000477970 KCTD4Q8WVF5 259 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 IGSF8Q969P0 613 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 STARD7Q9NQZ5 370 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 IGSF5Q9NSI5 407 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PRG3Q9Y2Y8 225 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-212ENST00000477970 PCDHB7Q9Y5E2 793 aa12.32□□□□□ -0.44
PTPRF-212ENST00000477970 ANKRD36A6QL64 1941 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 TK2O00142 265 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 PRAMEF11O60813 436 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ATXN1LP0C7T5 689 aaKnown RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 CPB1P15086 417 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 PSMA3P25788 255 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 RCN1Q15293 331 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 SEL1L3Q68CR1 1132 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ZNF470Q6ECI4 717 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 KLHDC10Q6PID8 442 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ANKS3Q6ZW76 656 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 PIWIL4Q7Z3Z4 852 aaKnown RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 OR13J1Q8NGT2 312 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 NAF1Q96HR8 494 aaKnown RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 MAELQ96JY0 434 aaKnown RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 FAM161BQ96MY7 647 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 OMDQ99983 421 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 NT5MQ9NPB1 228 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 TCF7L2Q9NQB0 619 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 HSFX1Q9UBD0 423 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 SLC7A8Q9UHI5 535 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 NUDT5Q9UKK9 219 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ANGPTL2Q9UKU9 493 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 GOLGA8TH3BQL2 631 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 J3KR12 359 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 PHGDHO43175 533 aaKnown RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 DLX3O60479 287 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 RAMP2O60895 175 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 CNTN5O94779 1100 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 MYCNP04198 464 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ALDH2P05091 517 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 HLA-DPA1P20036 260 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ATP5F1P24539 256 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-212ENST00000477970 ABCG1P45844 678 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 CPA2P48052 419 aa12.31□□□□□ -0.44
PTPRF-212ENST00000477970 PFKPQ01813 784 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms