RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PHKG1Q16816 387 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ZC3H12AQ5D1E8 599 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 LENG9Q96B70 501 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ZDHHC18Q9NUE0 388 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 LOC100506127A0A0U1RQW1 187 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 AZIN1O14977 448 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 NRP2O60462 931 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 STAU1O95793 577 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 NFICP08651 508 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 PTPN1P18031 435 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 IFNGR2P38484 337 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CENPAP49450 140 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ZNF57Q68EA5 555 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SAPCD2Q86UD0 394 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SLCO2A1Q92959 643 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 TSPAN18Q96SJ8 248 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 RHOBTB2Q9BYZ6 727 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CORO2BQ9UQ03 480 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SPACA6W5XKT8 324 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 TTLL13PA6NNM8 815 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ALDH1A2O94788 518 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CCNB1P14635 433 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 TRIM48Q8IWZ4 208 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 TNS4Q8IZW8 715 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 HASPINQ8TF76 798 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CAPN10Q9HC96 672 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 TUBA8Q9NY65 449 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SH3GLB1Q9Y371 365 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CAPN8A6NHC0 703 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ALDH2P05091 517 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 FGFR1P11362 822 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 CAPSQ13938 189 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 KHDC1Q4VXA5 237 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 KLHL17Q6TDP4 642 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ANKS1BQ7Z6G8 1248 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 ZFPM1Q8IX07 1006 aa19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 SENP6Q9GZR1 1112 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 FAM124BQ9H5Z6 455 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-204ENST00000463837 HGFP14210 728 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 FAM47BQ8NA70 645 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 SOCS4Q8WXH5 440 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 PPP1R14BQ96C90 147 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 ATP13A1Q9HD20 1204 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 PNPLA8Q9NP80 782 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 CIDEBQ9UHD4 219 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 GNEQ9Y223 722 aaKnown RBP19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 GSTK1Q9Y2Q3 226 aa19.14■□□□□ 0.66
CCDC88B-204ENST00000463837 TSPAN19P0C672 248 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 UBA1P22314 1058 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 MATKP42679 507 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 NDUFA5Q16718 116 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 FNBP1LQ5T0N5 605 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC4A11Q8NBS3 891 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 LRRN4Q8WUT4 740 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SF3B1O75533 1304 aaKnown RBP eCLIP19.14■□□□□ 0.655e-8■■■■■ 63.3
CCDC88B-204ENST00000463837 FOXO6A8MYZ6 492 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 PDHXO00330 501 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC28A1O00337 649 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 USP17L7P0C7H9 530 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF286BP0CG31 522 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC7A2P52569 658 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 MTTPP55157 894 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 MAPKAPK3Q16644 382 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 AFTPHQ6ULP2 937 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 ITIH5Q86UX2 942 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 HPS6Q86YV9 775 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 DNAJB14Q8TBM8 379 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 ZHX1-C8orf76Q96EF9 292 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 EHD3Q9NZN3 535 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 C2orf71A6NGG8 1288 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC22A2O15244 555 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 GOT1P17174 413 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 TRAP1Q12931 704 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 USP4Q13107 963 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 SYT12Q8IV01 421 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 DSELQ8IZU8 1212 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 GALNT15Q8N3T1 639 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 OMDQ99983 421 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 CDT1Q9H211 546 aa19.14■□□□□ 0.65
CCDC88B-204ENST00000463837 CDC73Q6P1J9 531 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ZDHHC24Q6UX98 284 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 STRADAQ7RTN6 431 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 EPB41L4BQ9H329 900 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 VPS45Q9NRW7 570 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 NUDT5Q9UKK9 219 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 PCDHGC3Q9UN70 934 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 AKAP5P24588 427 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 GRK3P35626 688 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 RAB15P59190 212 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 SPESP1Q6UW49 350 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 SPATA19Q7Z5L4 167 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 GPC2Q8N158 579 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 BANPQ8N9N5 519 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 Q96MT0 163 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ABHD16BQ9H3Z7 469 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ABCB10Q9NRK6 738 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 FBXO5Q9UKT4 447 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 SNX6Q9UNH7 406 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 PEX11AO75192 247 aa19.13■□□□□ 0.65
CCDC88B-204ENST00000463837 ITGB5P18084 799 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms