RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CD160O95971 181 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 EPOP01588 193 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 CHRNB1P11230 501 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 HLA-DPA1P20036 260 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 PRKCHP24723 683 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 TARSP26639 723 aaKnown RBP10.2□□□□□ -0.78
CD44-207ENST00000425428 RPS9P46781 194 aaKnown RBP10.2□□□□□ -0.78
CD44-207ENST00000425428 SUOXP51687 545 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 ARL4CP56559 192 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 CDH17Q12864 832 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 CAMK2GQ13555 558 aaPredicted RBP10.2□□□□□ -0.78
CD44-207ENST00000425428 MAP9Q49MG5 647 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 ARSIQ5FYB1 569 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 FAXCQ5TGI0 409 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 FBXL19Q6PCT2 694 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 TRIM67Q6ZTA4 783 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 USP45Q70EL2 814 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 STK40Q8N2I9 435 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 ZNF366Q8N895 744 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 OR6K2Q8NGY2 324 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 OR2T3Q8NH03 318 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 FRS2Q8WU20 508 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 MYO19Q96H55 970 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 FEM1CQ96JP0 617 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 NECAB3Q96P71 396 aaPredicted RBP10.2□□□□□ -0.78
CD44-207ENST00000425428 GABRG3Q99928 467 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 OMDQ99983 421 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 BFARQ9NZS9 450 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 SAMD15Q9P1V8 674 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 PHTF1Q9UMS5 762 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 SHOC2Q9UQ13 582 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 SPTBN5Q9NRC6 3674 aaKnown RBP10.2□□□□□ -0.78
CD44-207ENST00000425428 NCOR1O75376 2440 aa10.2□□□□□ -0.78
CD44-207ENST00000425428 CKAP5Q14008 2032 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CHURC1-FNTBB4DL54 471 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 NEMP1O14524 444 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 LEFTY1O75610 366 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 METTL18O95568 372 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 NDST3O95803 873 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 MT-CYBP00156 380 aaPredicted RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 CPP00450 1065 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 FGF1P05230 155 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 UGT2B4P06133 528 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CYP2A6P11509 494 aaPredicted RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 C5AR1P21730 350 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CD68P34810 354 aaPredicted RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 ITGA8P53708 1063 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PLTPP55058 493 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 WNT3AP56704 352 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PDE1BQ01064 536 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ZBTB16Q05516 673 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 MESP2Q0VG99 397 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ENPP2Q13822 863 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ZNF805Q5CZA5 627 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 C9orf64Q5T6V5 341 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 DUPD1Q68J44 220 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CENPUQ71F23 418 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 SYT13Q7L8C5 426 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 KDELC2Q7Z4H8 507 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 TTC7BQ86TV6 843 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PGBD5Q8N414 524 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 SPEM1Q8N4L4 309 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 TSTD1Q8NFU3 115 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 SPATA22Q8NHS9 363 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PIP4K2CQ8TBX8 421 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.19□□□□□ -0.78
CD44-207ENST00000425428 FICDQ9BVA6 458 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 FOXQ1Q9C009 403 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PRSS16Q9NQE7 514 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PCDHB9Q9Y5E1 797 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PCDHGC4Q9Y5F7 938 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ERLIN1O75477 346 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 SEC31AO94979 1220 aaKnown RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 CR2P20023 1033 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 RPL21P46778 160 aaKnown RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 GRIA4P48058 902 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PSMD8P48556 350 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 NPY2RP49146 381 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CCR3P51677 355 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 NRLP54845 237 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 MRPS25P82663 173 aaKnown RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 SKOR1P84550 965 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ELP6Q0PNE2 266 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ARHGEF7Q14155 803 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CRY1Q16526 586 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CASC4Q6P4E1 433 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 PRUNE1Q86TP1 453 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 KBTBD6Q86V97 674 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 TMPRSS6Q8IU80 811 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CAMK1DQ8IU85 385 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 MMAAQ8IVH4 418 aaKnown RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 MCUQ8NE86 351 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 LPCAT1Q8NF37 534 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 GABPB2Q8TAK5 448 aaPredicted RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 ARRDC2Q8TBH0 407 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 RAB7BQ96AH8 199 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 SIPA1Q96FS4 1042 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 KLHL32Q96NJ5 620 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 ACOX2Q99424 681 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 MLPHQ9BV36 600 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms