RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ABCC13Q9NSE7 274 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 NCKIPSDQ9NZQ3 722 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 BTRCQ9Y297 605 aa13.52□□□□□ -0.25
VPS54-203ENST00000409558 GLDCP23378 1020 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 NPY2RP49146 381 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 THOP1P52888 689 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 ACTR3P61158 418 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 ECT2LQ008S8 904 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 SEMA3BQ13214 749 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 BLMHQ13867 455 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 NRF1Q16656 503 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 FAM83EQ2M2I3 478 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 TRMT5Q32P41 509 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 SFT2D3Q587I9 215 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 FSCBQ5H9T9 825 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 RASAL3Q86YV0 1011 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 ACBD6Q9BR61 282 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 ABCG8Q9H221 673 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 LRRC42Q9Y546 428 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 NCAM2O15394 837 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 SMNDC1O75940 238 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS54-203ENST00000409558 ANXA9O76027 345 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 CPOXP36551 454 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 IYDQ6PHW0 289 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 DIS3LQ8TF46 1054 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 NTAN1Q96AB6 310 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 PPWD1Q96BP3 646 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 MRGPRX2Q96LB1 330 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 TLE6Q9H808 572 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 APPL1Q9UKG1 709 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 GIT1Q9Y2X7 761 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 PTCH2Q9Y6C5 1203 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 RANBP2P49792 3224 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 LINGO3P0C6S8 592 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 DSG1Q02413 1049 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 CDC16Q13042 620 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 CYLC2Q14093 348 aaPredicted RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 ZNF235Q14590 738 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 XKR4Q5GH76 650 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 DNAJC1Q96KC8 554 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 ZNF512Q96ME7 567 aaPredicted RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 EIF2B3Q9NR50 452 aaKnown RBP13.51□□□□□ -0.25
VPS54-203ENST00000409558 OXSMQ9NWU1 459 aa13.51□□□□□ -0.25
VPS54-203ENST00000409558 ARNTP27540 789 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 TAF12Q16514 161 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 LIPMQ5VYY2 423 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 KCTD11Q693B1 232 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 ENDOVQ8N8Q3 282 aaKnown RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 GBP5Q96PP8 586 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 KCNA7Q96RP8 456 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 TUBGCP5Q96RT8 1024 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 YY1AP1Q9H869 796 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 GKN1Q9NS71 199 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 MARCH2Q9P0N8 246 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 PLXNA1Q9UIW2 1896 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 HDAC3O15379 428 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 RPS24P62847 133 aaKnown RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 PLA2G4EQ3MJ16 856 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 DSELQ8IZU8 1212 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 BHLHE22Q8NFJ8 381 aaPredicted RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 CNBD2Q96M20 576 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 GPR62Q9BZJ7 368 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 FAM8A1Q9UBU6 413 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 A0A0U1RQF3 1178 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 CBX4O00257 560 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 DNAJB2P25686 324 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 CCNIQ14094 377 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 PFKFB4Q16877 469 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 FBXL22Q6P050 247 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 C17orf99Q6UX52 265 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 DEFB128Q7Z7B8 93 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 ZNF598Q86UK7 904 aaKnown RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 MYLK4Q86YV6 388 aaPredicted RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 LGI2Q8N0V4 545 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 MYO9BQ13459 2157 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 MPOP05164 745 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 SBK3P0C264 359 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 GFAPP14136 432 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 GEMP55040 296 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 PDAP1Q13442 181 aaKnown RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 POLD3Q15054 466 aaPredicted RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 SPOUT1Q5T280 376 aaKnown RBP13.5□□□□□ -0.25
VPS54-203ENST00000409558 RGMBQ6NW40 437 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 RNF111Q6ZNA4 994 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 LINC00523Q86TU6 105 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 SERINC5Q86VE9 423 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 ICA1LQ8NDH6 482 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 TCAF1Q9Y4C2 921 aa13.5□□□□□ -0.25
VPS54-203ENST00000409558 PLXNB2O15031 1838 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 MTSS1O43312 755 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 CRCPO75575 148 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 KCNC1P48547 511 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 VARS2Q5ST30 1063 aaKnown RBP13.49□□□□□ -0.25
VPS54-203ENST00000409558 NET1Q7Z628 596 aaPredicted RBP13.49□□□□□ -0.25
VPS54-203ENST00000409558 SLC9A7Q96T83 725 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 S100A14Q9HCY8 104 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 MATN3O15232 486 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 SPATA31D3P0C874 917 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 FMO4P31512 558 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 SCNN1AP37088 669 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms