RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SLC7A14Q8TBB6 771 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 GPR152Q8TDT2 470 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 EDEM1Q92611 657 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 CAAP1Q9H8G2 361 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 VPS37BQ9H9H4 285 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 TUBA8Q9NY65 449 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 NINJ2Q9NZG7 142 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 PCYOX1Q9UHG3 505 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 MTUS1Q9ULD2 1270 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 PABPC1P11940 636 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 HMGA1P17096 107 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 DNAJB1P25685 340 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 CTNNB1P35222 781 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 ARL4CP56559 192 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 UBAP2LQ14157 1087 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 NR1D2Q14995 579 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 KCNJ8Q15842 424 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 ANKRD20A4Q4UJ75 823 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 BTBD8Q5XKL5 378 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 SCYL2Q6P3W7 929 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 BBS12Q6ZW61 710 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 RFPL4BQ6ZWI9 263 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 DHDDSQ86SQ9 333 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 TAC4Q86UU9 113 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 HSPH1Q92598 858 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 SLCO2A1Q92959 643 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 TRMT2BQ96GJ1 504 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF670Q9BS34 389 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 GMIPQ9P107 970 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 SLC17A7Q9P2U7 560 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 PCDHA11Q9Y5I1 949 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 I6L893 689 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 MCF2LO15068 1137 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 KLHL41O60662 606 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TTC4O95801 387 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 KRT10P13645 584 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 MYOGP15173 224 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CDH2P19022 906 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 DNAJB2P25686 324 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CHRNA3P32297 505 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 ERVFC1P60507 584 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 GNA12Q03113 381 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CNGA3Q16281 694 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 PCSK7Q16549 785 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CCNG2Q16589 344 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 HSP90AA5PQ58FG0 334 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 SLC45A4Q5BKX6 768 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 FAM109BQ6ICB4 259 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 DRICH1Q6PGQ1 229 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 POTEHQ6S545 545 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 FAM131BQ86XD5 332 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 RNF148Q8N7C7 305 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 MRPL43Q8N983 215 aaKnown RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 FBXO32Q969P5 355 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 THAP11Q96EK4 314 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 SAMD11Q96NU1 681 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 KLHL5Q96PQ7 755 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 C17orf80Q9BSJ5 609 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 DCLK3Q9C098 648 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 RCOR3Q9P2K3 495 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 AP4E1Q9UPM8 1137 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 YIPF1Q9Y548 306 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 ARHGAP10A1A4S6 786 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CCDC85CA6NKD9 419 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 PCP4L1A6NKN8 68 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 AGRPO00253 132 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 IRAK2O43187 625 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 ZWINTO95229 277 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CXCL14O95715 111 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 THRAP10827 490 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 IDO1P14902 403 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 ADRA1BP35368 520 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CDH6P55285 790 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 SH3BGRP55822 239 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TAF10Q12962 218 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 SEMA3BQ13214 749 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CAMK1Q14012 370 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 FASTKD3Q14CZ7 662 aaKnown RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 FXNQ16595 210 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CLVS1Q8IUQ0 354 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CLIP4Q8N3C7 705 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 GIPC2Q8TF65 315 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 RUNDC3BQ96NL0 473 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 KCTD15Q96SI1 283 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 GDF15Q99988 308 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 RNF38Q9H0F5 515 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TLR8Q9NR97 1041 aaKnown RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 DDIT4Q9NX09 232 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TBC1D30Q9Y2I9 924 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TGM5O43548 720 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CSH1P0DML2 217 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CSH2P0DML3 217 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 COILP38432 576 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 IFRD2Q12894 506 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-203ENST00000354674 NRF1Q16656 503 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 CCDC153Q494R4 210 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 TNFAIP8L3Q5GJ75 292 aa10.22□□□□□ -0.77
SYNE1-203ENST00000354674 PRPF39Q86UA1 669 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms