RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TRAF6Q9Y4K3 522 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 RIPK3Q9Y572 518 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 SNX9Q9Y5X1 595 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TLL2Q9Y6L7 1015 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 TRIP11Q15643 1979 aa6.86□□□□□ -1.31
VPS39-202ENST00000348544 CNTNAP1P78357 1384 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 RNF103-CHMP3A0A140T963 221 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 NME4O00746 187 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 AXIN1O15169 862 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 KDM1AO60341 852 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SRP72O76094 671 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 RASAL1O95294 804 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZBTB7AO95365 584 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TNNC2P02585 160 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 APOA4P06727 396 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 NFICP08651 508 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 NCAM1P13591 858 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 HNRNPLP14866 589 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS39-202ENST00000348544 LRPAP1P30533 357 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 CAPGP40121 348 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GSSP48637 474 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 FKBP1AP62942 108 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 SP2Q02086 613 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZBTB17Q13105 803 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF460Q14592 562 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SPCS2Q15005 226 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SF3B4Q15427 424 aaKnown RBP eCLIP6.85□□□□□ -1.312e-6■■■■□ 24.9
VPS39-202ENST00000348544 CLPPQ16740 277 aaPredicted RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF618Q5T7W0 954 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GTF2IRD2BQ6EKJ0 949 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 FAM45BPQ6NSW5 357 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 PMF1Q6P1K2 205 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 USP51Q70EK9 711 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GTF2IRD2Q86UP8 949 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SPPL2CQ8IUH8 684 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SCUBE3Q8IX30 993 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF567Q8N184 647 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TMCO5AQ8N6Q1 288 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 C12orf29Q8N999 325 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SHCBP1Q8NEM2 672 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 FAM45AQ8TCE6 357 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 PTCD2Q8WV60 388 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 SH3YL1Q96HL8 342 aaPredicted RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 SCYL1Q96KG9 808 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 RPL10LQ96L21 214 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 CCDC138Q96M89 665 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GPR78Q96P69 363 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF347Q96SE7 839 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 CTRCQ99895 268 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TUBA1CQ9BQE3 449 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 B3GNT5Q9BYG0 378 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 DNAI2Q9GZS0 605 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 LHPPQ9H008 270 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 MAP3K20Q9NYL2 800 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 SEPT10Q9P0V9 454 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 XPR1Q9UBH6 696 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 MID2Q9UJV3 735 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 PSME2Q9UL46 239 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 AP4E1Q9UPM8 1137 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 RAD54BQ9Y620 910 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 DHRS12A0PJE2 317 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 H0Y858 1186 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 PFDN6O15212 129 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 NRP2O60462 931 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 B4GALT4O60513 344 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 DDHD2O94830 711 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SNAP29O95721 258 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SNRPB2P08579 225 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 CXCL8P10145 99 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 VDRP11473 427 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TCEA1P23193 301 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 ELK4P28324 431 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 AXLP30530 894 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 MPP1Q00013 466 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SELENBP1Q13228 472 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 BFSP2Q13515 415 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 SQLEQ14534 574 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 INAVAQ3KP66 663 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF773Q6PK81 442 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 RPS27LQ71UM5 84 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 DSG4Q86SJ6 1040 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ADGRG5Q8IZF4 528 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TXNDC5Q8NBS9 432 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 ANKRD36BP1Q96IX9 119 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 CPB2Q96IY4 423 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 NSMCE3Q96MG7 304 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GPR22Q99680 433 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 C11orf84Q9BUA3 381 aaPredicted RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 MRPL4Q9BYD3 311 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 UPF3AQ9H1J1 476 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 SMARCAD1Q9H4L7 1026 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 LRRC40Q9H9A6 602 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GPN2Q9H9Y4 310 aaPredicted RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 CD320Q9NPF0 282 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 TLR9Q9NR96 1032 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 IARS2Q9NSE4 1012 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 GTSE1Q9NYZ3 720 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 EGFL7Q9UHF1 273 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 GTF2IRD1Q9UHL9 959 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 RUVBL2Q9Y230 463 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms