RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 DENRO43583 198 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PLIN3O60664 434 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ZBTB11O95625 1053 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 HGFP14210 728 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SCNN1BP51168 640 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 EVX2Q03828 476 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ADIGQ0VDE8 80 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ZFP69Q49AA0 526 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 DALRD3Q5D0E6 543 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 UNC93AQ86WB7 457 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 LRRC49Q8IUZ0 686 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 NKX2-3Q8TAU0 364 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 GTF3C2Q8WUA4 911 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PRMT6Q96LA8 375 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 Q96MT0 163 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 FICDQ9BVA6 458 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 GPR63Q9BZJ6 419 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TSR3Q9UJK0 312 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TMCC3Q9ULS5 477 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TDRKHQ9Y2W6 561 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KCNU1A8MYU2 1149 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SEC22BO75396 215 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ACO1P21399 889 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CAPGP40121 348 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KPNA1P52294 538 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SLC7A2P52569 658 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TYSND1Q2T9J0 566 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 FSTL4Q6MZW2 842 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PKN3Q6P5Z2 889 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SMARCD1Q96GM5 515 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TEKT5Q96M29 485 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CINPQ9BW66 212 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ABCB10Q9NRK6 738 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SETD4Q9NVD3 440 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 OR12D3Q9UGF7 316 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CCDC189A1A4V9 331 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ITGA2P17301 1181 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 NNMTP40261 264 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PGS1Q32NB8 556 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 IL27RAQ6UWB1 636 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SPPL2CQ8IUH8 684 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PLD5Q8N7P1 536 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ACER1Q8TDN7 264 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 GATA6Q92908 595 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MAF1Q9H063 256 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TKTL2Q9H0I9 626 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF696Q9H7X3 374 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF221Q9UK13 617 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 AJAP1Q9UKB5 411 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 LRFN2Q9ULH4 789 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SPATA31A5Q5VU36 1347 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SPATA31A7Q8IWB4 1347 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 LACTBL1A8MY62 500 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 RNASEH1O60930 286 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 C2P06681 752 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 RPS12P25398 132 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 IL2P60568 153 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 POU5F1Q01860 360 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CCNYL2Q5T2Q4 361 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 EGFLAMQ63HQ2 1017 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CASP12Q6UXS9 341 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 AGBL3Q8NEM8 1001 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 WNT8BQ93098 351 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TAMM41Q96BW9 452 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TMCO6Q96DC7 493 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 YTHDF1Q9BYJ9 559 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 GPR88Q9GZN0 384 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ARHGAP28Q9P2N2 729 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ZNRF3Q9ULT6 936 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KLHL20Q9Y2M5 609 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CRYL1Q9Y2S2 319 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TELO2Q9Y4R8 837 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SPATA31A6Q5VVP1 1343 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CICQ96RK0 1608 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 PLK4O00444 970 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CCNKO75909 580 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 IPO13O94829 963 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CALCAP01258 141 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CHI3L1P36222 383 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ARPC4P59998 168 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 RHBDF2Q6PJF5 856 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ILDR2Q71H61 639 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 STK40Q8N2I9 435 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ST13P5Q8NFI4 369 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 LPGAT1Q92604 370 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 ATG4CQ96DT6 458 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 EBF4Q9BQW3 602 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 CLPBQ9H078 707 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 REEP1Q9H902 201 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SIRPGQ9P1W8 387 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 DSEQ9UL01 958 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 WBP11Q9Y2W2 641 aaKnown RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 SF3B1O75533 1304 aaKnown RBP eCLIP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 DOT1LQ8TEK3 1739 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 FAM220BPB1ANY3 271 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 DNAJB1P25685 340 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 KIAA1841Q6NSI8 718 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 TATDN1Q6P1N9 297 aa4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MAGEB10Q96LZ2 347 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-203ENST00000343508 MTFR1LQ9H019 292 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms