RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 VPS39Q96JC1 886 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 EFHD1Q9BUP0 239 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 C1orf50Q9BV19 199 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 MROQ9BYG7 248 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 NOL6Q9H6R4 1146 aaKnown RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 USP22Q9UPT9 525 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 ZFC3H1O60293 1989 aaKnown RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 RGPD3A6NKT7 1758 aaPredicted RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 RGPD4Q7Z3J3 1758 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 ZBBXA8MT70 800 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 RSL1D1O76021 490 aaKnown RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 ICAM1P05362 532 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 S100A1P23297 94 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 SPRP35270 261 aaPredicted RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 CAP2P40123 477 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 PRKAA1Q13131 559 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 IMPG1Q17R60 797 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 PYCR3Q53H96 274 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 DDIASQ8IXT1 998 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 HDAC10Q969S8 669 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 UHRF1Q96T88 793 aaPredicted RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 CPNE1Q99829 537 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 ALOXE3Q9BYJ1 711 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 OSBPL2Q9H1P3 480 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 RAD21L1Q9H4I0 556 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 PTGDR2Q9Y5Y4 395 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 SLC30A1Q9Y6M5 507 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 TANC1Q9C0D5 1861 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 NME4O00746 187 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ACOX3O15254 700 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 GUCY1B2O75343 617 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 GJB1P08034 283 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SFNP31947 248 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SHMT2P34897 504 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 APLP1P51693 650 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 PLA2G16P53816 162 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 GJA9P57773 515 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 TSTD2Q5T7W7 516 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 CLEC6AQ6EIG7 209 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ILDR2Q71H61 639 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 RNF135Q8IUD6 432 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SLC41A1Q8IVJ1 513 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 BRSK2Q8IWQ3 736 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 CCDC185Q8N715 623 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 DNAAF3Q8N9W5 541 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ZNF280CQ8ND82 737 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 PTCD2Q8WV60 388 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 UPF1Q92900 1129 aaKnown RBP eCLIP13.59□□□□□ -0.23
SKA3-201ENST00000298260 SEPHS2Q99611 448 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 BEGAINQ9BUH8 593 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 EXD2Q9NVH0 621 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 DHRS12A0PJE2 317 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 RGS20O76081 388 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 RAB15P59190 212 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 POLD3Q15054 466 aaPredicted RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 GRTP1Q5TC63 336 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 XAF1Q6GPH4 301 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 MCF2L2Q86YR7 1114 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 EXOC8Q8IYI6 725 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 DHRSXQ8N5I4 330 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 NXNL1Q96CM4 212 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ANKRD36BP1Q96IX9 119 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 UPF3AQ9H1J1 476 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 VPS33BQ9H267 617 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 LHX5Q9H2C1 402 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 MRPL46Q9H2W6 279 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 SCUBE2Q9NQ36 999 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ITM2CQ9NQX7 267 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 GGA3Q9NZ52 723 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 PTBP2Q9UKA9 531 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 PSME2Q9UL46 239 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 FER1L6Q2WGJ9 1857 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ANKRD34BA5PLL1 514 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 MFSD11O43934 449 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 BCAS1O75363 584 aaPredicted RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 BDNFP23560 247 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 USP10Q14694 798 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 PAGE2BQ5JRK9 111 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 TMEM236Q5W0B7 351 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 PMF1Q6P1K2 205 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ITIH5Q86UX2 942 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 WDR49Q8IV35 697 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 LGI2Q8N0V4 545 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SMG8Q8ND04 991 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 PDZD8Q8NEN9 1154 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SPPL2BQ8TCT7 592 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 SREK1Q8WXA9 508 aaKnown RBP13.59□□□□□ -0.23
SKA3-201ENST00000298260 P2RY11Q96G91 374 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 CTRCQ99895 268 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ATP13A3Q9H7F0 1226 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ERVK-11Q9UQG0 969 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 ATP11BQ9Y2G3 1177 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 RIPK3Q9Y572 518 aa13.59□□□□□ -0.23
SKA3-201ENST00000298260 A0A0A0MRY4 1105 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 INPP4BO15327 924 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SRP72O76094 671 aaKnown RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 KCNA5P22460 613 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 FSHRP23945 695 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ACTR2P61160 394 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CAPSQ13938 189 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms