RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NACA2Q9H009 215 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RHOJQ9H4E5 214 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 COG4Q9H9E3 785 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ENTPD7Q9NQZ7 604 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 TLR8Q9NR97 1041 aaKnown RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 UXTQ9UBK9 157 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 APOBEC2Q9Y235 224 aaKnown RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 PATJQ8NI35 1801 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MMP2P08253 660 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MPSTP25325 297 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 OR1D2P34982 312 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RENBPP51606 427 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CCDC153Q494R4 210 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 PREPLQ4J6C6 727 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 SLC9B1Q4ZJI4 515 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 UMODL1-AS1Q8N2C9 162 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 TMEM151AQ8N4L1 468 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 EFCAB3Q8N7B9 438 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.74□□□□□ -0.692e-6■■■■■ 29.2
CUX1-221ENST00000622516 SLC43A3Q8NBI5 491 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 BTN2A3PQ96KV6 586 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 SMIM14Q96QK8 99 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CCDC106Q9BWC9 280 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 WDR55Q9H6Y2 383 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 GKN1Q9NS71 199 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RAMP2O60895 175 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 SLC4A1P02730 911 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MPOP05164 745 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RHOQP17081 205 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 FGFR3P22607 806 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GLDCP23378 1020 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 PGM1P36871 562 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GRIA4P48058 902 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ARSDP51689 593 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 SLC25A3Q00325 362 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ZNF33AQ06730 810 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GPR17Q13304 367 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GALNT3Q14435 633 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 IL31Q6EBC2 164 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 NEPROQ6NW34 567 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MSANTD2Q6P1R3 559 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 KDELC1Q6UW63 502 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.74□□□□□ -0.691e-8■■■■□ 26.3
CUX1-221ENST00000622516 FAM126BQ8IXS8 530 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 LGI2Q8N0V4 545 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 PHTF2Q8N3S3 785 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ATP6V0D2Q8N8Y2 350 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 RAB3IL1Q8TBN0 382 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ZNF296Q8WUU4 475 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 ZNF512Q96ME7 567 aaPredicted RBP10.74□□□□□ -0.69
CUX1-221ENST00000622516 FAM161BQ96MY7 647 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 THTPAQ9BU02 230 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 C1QTNF1Q9BXJ1 281 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 UNC93B1Q9H1C4 597 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 SLC25A51Q9H1U9 297 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 CHD7Q9P2D1 2997 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 GREB1Q4ZG55 1949 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 MIA3Q5JRA6 1907 aa10.74□□□□□ -0.69
CUX1-221ENST00000622516 ZNF195O14628 629 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TRIM13O60858 407 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SIN3BO75182 1162 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SORBS2O94875 1100 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 SLC2A3P11169 496 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SLC6A4P31645 630 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 PLK1P53350 603 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CSE1LP55060 971 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 RPS24P62847 133 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 HNRNPDQ14103 355 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 KRT72Q14CN4 511 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 ACSBG2Q5FVE4 666 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CFAP157Q5JU67 520 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SPDYAQ5MJ70 313 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 WLSQ5T9L3 541 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 POTEHQ6S545 545 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CCNYL1Q8N7R7 359 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 FBXO22Q8NEZ5 403 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 OR7D4Q8NG98 312 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 MAGEC3Q8TD91 643 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 BLOC1S5Q8TDH9 187 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 ISL2Q96A47 359 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 IMP4Q96G21 291 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 HHIPL1Q96JK4 782 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 DEFB118Q96PH6 123 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CYP2S1Q96SQ9 504 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SEMA3CQ99985 751 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TTPALQ9BTX7 342 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SPON2Q9BUD6 331 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TREX1Q9NSU2 369 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TMEM248Q9NWD8 314 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 XPR1Q9UBH6 696 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 FBXO5Q9UKT4 447 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CRYL1Q9Y2S2 319 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 FIS1Q9Y3D6 152 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 MYO7AQ13402 2215 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 PSMD3O43242 534 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 DCXO43602 365 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 JUNP05412 331 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 SERPINA6P08185 405 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 IRF1P10914 325 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 STMN1P16949 149 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms