RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	RD3	Q7Z3Z2	195 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	VPS36	Q86VN1	386 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	HID1	Q8IV36	788 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	SCG3	Q8WXD2	468 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	HSFY1	Q96LI6	401 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	SRRT	Q9BXP5	876 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	MBNL1	Q9NR56	388 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	ST7	Q9NRC1	585 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	SERTAD1	Q9UHV2	236 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	KIAA1257	Q9ULG3	409 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	MAPK8IP1	Q9UQF2	711 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232	TBC1D30	Q9Y2I9	924 aa		11.96	□□□□□ -0.49
CLK3-222	ENST00000568232		A0A0D9SEW6	157 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232		M0QYT0	321 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	CUTA	O60888	179 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	FGF3	P11487	239 aa	Predicted RBP	11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	CTSE	P14091	401 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	GK	P32189	559 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	UGT1A3	P35503	534 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	DNA2	P51530	1060 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	HK3	P52790	923 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	RIPPLY3	P57055	190 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	KRT83	P78385	493 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	ENPEP	Q07075	957 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	KLRB1	Q12918	225 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	ADAM9	Q13443	819 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	CNGA2	Q16280	664 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	LACTB2	Q53H82	288 aa	Predicted RBP	11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	LVRN	Q6Q4G3	990 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	TMEM270	Q6UE05	265 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	MACC1	Q6ZN28	852 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	SPRED1	Q7Z699	444 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	FSTL5	Q8N475	847 aa	Predicted RBP	11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	RCBTB1	Q8NDN9	531 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	DENND6B	Q8NEG7	585 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	CATSPER2	Q96P56	530 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	EDEM3	Q9BZQ6	932 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	RDH14	Q9HBH5	336 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	SLC12A6	Q9UHW9	1150 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	OTOG	Q6ZRI0	2925 aa		11.95	□□□□□ -0.5
CLK3-222	ENST00000568232	TRPM6	Q9BX84	2022 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	CACNA1D	Q01668	2161 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ZNF891	A8MT65	544 aa	Predicted RBP	11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	NEMP1	O14524	444 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	TSPAN6	O43657	245 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	CLDN11	O75508	207 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ALPI	P09923	528 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	PDC	P20941	246 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	DCT	P40126	519 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	RECQL	P46063	649 aa	Predicted RBP	11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	MCCD1	P59942	119 aa	Predicted RBP	11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	YPEL5	P62699	121 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	TAF5	Q15542	800 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	NFIL3	Q16649	462 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ARHGAP44	Q17R89	818 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ALG11	Q2TAA5	492 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	DEFB109B	Q30KR1	87 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ALF	Q53S48	1182 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	EFHC2	Q5JST6	749 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	KCTD16	Q68DU8	428 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	CAPRIN2	Q6IMN6	1127 aa	Known RBP	11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	CACNA2D3	Q8IZS8	1091 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	GPR156	Q8NFN8	814 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	ASB12	Q8WXK4	309 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	PAGE5	Q96GU1	130 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	EPAS1	Q99814	870 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	HEPH	Q9BQS7	1158 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	APPL1	Q9UKG1	709 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	MTMR6	Q9Y217	621 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	TP53TG5	Q9Y2B4	290 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	HS3ST4	Q9Y661	456 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	SDK2	Q58EX2	2172 aa		11.94	□□□□□ -0.5
CLK3-222	ENST00000568232	VPS4B	O75351	444 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	PRKCG	P05129	697 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	RHOC	P08134	193 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	PAEP	P09466	180 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	GLB1	P16278	677 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	TNFRSF8	P28908	595 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	OAS2	P29728	719 aa	Known RBP	11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	CCR1	P32246	355 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	RPL34	P49207	117 aa	Known RBP	11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	CCNH	P51946	323 aa	Predicted RBP	11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	YWHAE	P62258	255 aa	Known RBP	11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	LRRC73	Q5JTD7	316 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	CERCAM	Q5T4B2	595 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	ATP1A1-AS1	Q5TC04	95 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	BEND5	Q7L4P6	421 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	GKN2	Q86XP6	184 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	SRRM1	Q8IYB3	904 aa	Known RBP	11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	ZNF454	Q8N9F8	522 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	OR6C4	Q8NGE1	309 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	GPBAR1	Q8TDU6	330 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	TAAR9	Q96RI9	348 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	KCNK17	Q96T54	332 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	B3GNT4	Q9C0J1	378 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	SIK2	Q9H0K1	926 aa		11.93	□□□□□ -0.5
CLK3-222	ENST00000568232	CDH19	Q9H159	772 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms