RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TTLL3Q9Y4R7 772 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 R4GN57 208 aa22.05■■□□□ 1.12
SNX1-210ENST00000560260 MUC6Q6W4X9 2439 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CACNA1HO95180 2353 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 BCLAF3A2AJT9 711 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 CTAGE9A4FU28 777 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CES2O00748 559 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 HRO43593 1189 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 LILRB5O75023 590 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 ACADMP11310 421 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CD68P34810 354 aaPredicted RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 AP1S1P61966 158 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CNTN1Q12860 1018 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 OASLQ15646 514 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 DARS2Q6PI48 645 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 PARS2Q7L3T8 475 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 ZSWIM9Q86XI8 627 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CAMK1DQ8IU85 385 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 ZNF567Q8N184 647 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.04■■□□□ 1.12
SNX1-210ENST00000560260 PRELID2Q8N945 189 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 KLHL32Q96NJ5 620 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 AGAP3Q96P47 875 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 PRRX2Q99811 253 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 CPEB1Q9BZB8 566 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 POLR1EQ9GZS1 481 aaKnown RBP22.04■■□□□ 1.12
SNX1-210ENST00000560260 FBXL12Q9NXK8 326 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 AMACRQ9UHK6 382 aa22.04■■□□□ 1.12
SNX1-210ENST00000560260 VPS13AQ96RL7 3174 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 MMP2P08253 660 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 TCP1P17987 556 aaKnown RBP22.03■■□□□ 1.12
SNX1-210ENST00000560260 GDF10P55107 478 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 ITKQ08881 620 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 NUMA1Q14980 2115 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 TTC31Q49AM3 519 aaPredicted RBP22.03■■□□□ 1.12
SNX1-210ENST00000560260 TEX44Q53QW1 395 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 AGBL4Q5VU57 503 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 FAM46CQ5VWP2 391 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 GDPD4Q6W3E5 623 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 FAM124AQ86V42 546 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 HDDC3Q8N4P3 179 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 NKD2Q969F2 451 aaPredicted RBP22.03■■□□□ 1.12
SNX1-210ENST00000560260 TEKT5Q96M29 485 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 SCUBE2Q9NQ36 999 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 RAPGEFL1Q9UHV5 662 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 PCDHGA2Q9Y5H1 932 aa22.03■■□□□ 1.12
SNX1-210ENST00000560260 PGRMC1O00264 195 aaKnown RBP22.02■■□□□ 1.12
SNX1-210ENST00000560260 KCNN4O15554 427 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 RNASEH2AO75792 299 aaKnown RBP22.02■■□□□ 1.12
SNX1-210ENST00000560260 ITGB7P26010 798 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 TRAF2Q12933 501 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 SNX1Q13596 522 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 ZNF805Q5CZA5 627 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 PIP5KL1Q5T9C9 394 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 ACTRT1Q8TDG2 376 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 GAB3Q8WWW8 586 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 LRIG1Q96JA1 1093 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 TUBGCP5Q96RT8 1024 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 OSBPL1AQ9BXW6 950 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 NEUROG2Q9H2A3 272 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 GLOD4Q9HC38 313 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 SCML1Q9UN30 329 aa22.02■■□□□ 1.12
SNX1-210ENST00000560260 TSPAN11A1L157 253 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 TRAFD1O14545 582 aaPredicted RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 SPINT1O43278 529 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 MTSS1O43312 755 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 ZNF217O75362 1048 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 NEBLO76041 1014 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 PRLRP16471 622 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 NFKB1P19838 968 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 ACSL1P33121 698 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 ABL2P42684 1182 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 RAD51Q06609 339 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 USP39Q53GS9 565 aaKnown RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 USP30Q70CQ3 517 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 FAM71DQ8N9W8 422 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 GANCQ8TET4 914 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 TOE1Q96GM8 510 aaKnown RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 TMEM121Q9BTD3 319 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 AP1M1Q9BXS5 423 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 FRMD8P1Q9BZ68 369 aaPredicted RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 ATP13A3Q9H7F0 1226 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 FAM86C1Q9NVL1 165 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 WSB2Q9NYS7 404 aaPredicted RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 KLHL8Q9P2G9 620 aaPredicted RBP22.01■■□□□ 1.11
SNX1-210ENST00000560260 PCDHGC4Q9Y5F7 938 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 SAR1BQ9Y6B6 198 aa22.01■■□□□ 1.11
SNX1-210ENST00000560260 USP34Q70CQ2 3546 aa22■■□□□ 1.11
SNX1-210ENST00000560260 C16orf96A6NNT2 1141 aa22■■□□□ 1.11
SNX1-210ENST00000560260 F5H423 210 aaPredicted RBP22■■□□□ 1.11
SNX1-210ENST00000560260 RPP40O75818 363 aaKnown RBP22■■□□□ 1.11
SNX1-210ENST00000560260 CASQ1P31415 396 aa22■■□□□ 1.11
SNX1-210ENST00000560260 MAPK8P45983 427 aa22■■□□□ 1.11
SNX1-210ENST00000560260 PTPN5P54829 565 aa22■■□□□ 1.11
SNX1-210ENST00000560260 TAS2R38P59533 333 aa22■■□□□ 1.11
SNX1-210ENST00000560260 SKOR1P84550 965 aa22■■□□□ 1.11
SNX1-210ENST00000560260 BCL2L1Q07817 233 aa22■■□□□ 1.11
SNX1-210ENST00000560260 BYSLQ13895 437 aaKnown RBP22■■□□□ 1.11
SNX1-210ENST00000560260 CCNG2Q16589 344 aa22■■□□□ 1.11
SNX1-210ENST00000560260 RALGPS1Q5JS13 557 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms