RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 TAS2R40P59535 323 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 ZNF423Q2M1K9 1284 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 ATP13A4Q4VNC1 1196 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 TMEM259Q4ZIN3 620 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 NEK5Q6P3R8 708 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 NAXDQ8IW45 347 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 TC2NQ8N9U0 490 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 MYOCQ99972 504 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 OSBPL1AQ9BXW6 950 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 SLC32A1Q9H598 525 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 FZD3Q9NPG1 666 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 ITM2BQ9Y287 266 aa20.79■□□□□ 0.92
VTI1B-205ENST00000555543 CEP295Q9C0D2 2601 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 SPAARA0A1B0GVQ0 90 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 SLC31A1O15431 190 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 IL4RP24394 825 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 NUDT1P36639 197 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 ARSEP51690 589 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 CDH6P55285 790 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 MMRN1Q13201 1228 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 FGL2Q14314 439 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 LRRC73Q5JTD7 316 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 PRAMEF14Q5SWL7 426 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 TMCO3Q6UWJ1 677 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 GDPD4Q6W3E5 623 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 TMEM145Q8NBT3 493 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 FAM71BQ8TC56 605 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 SP110Q9HB58 689 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 KLHL11Q9NVR0 708 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 PCNX2A6NKB5 2137 aa20.78■□□□□ 0.92
VTI1B-205ENST00000555543 CABIN1Q9Y6J0 2220 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 PRAMEF26H0Y7S4 382 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 AP1G1O43747 822 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 PIGNO95427 931 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 PMLP29590 882 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 ZNF75DP51815 510 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 NXPH1P58417 271 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 IL9RQ01113 521 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 IL10RBQ08334 325 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 KRT81Q14533 505 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 HADHQ16836 314 aaKnown RBP20.77■□□□□ 0.92
VTI1B-205ENST00000555543 SPATS2Q86XZ4 545 aaKnown RBP20.77■□□□□ 0.92
VTI1B-205ENST00000555543 LZTR1Q8N653 840 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 MFSD2AQ8NA29 543 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 TSEN2Q8NCE0 465 aaKnown RBP20.77■□□□□ 0.92
VTI1B-205ENST00000555543 SLC35G2Q8TBE7 412 aa20.77■□□□□ 0.92
VTI1B-205ENST00000555543 IPO11Q9UI26 975 aaKnown RBP20.77■□□□□ 0.92
VTI1B-205ENST00000555543 SPEGQ15772 3267 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 TMEM110-MUSTN1A8MSY1 372 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 TLR4O00206 839 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 MUSKO15146 869 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 CBFA2T3O75081 653 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 PALMO75781 387 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 CCT8P50990 548 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 RAD51Q06609 339 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 DPYSL3Q14195 570 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 SHBQ15464 509 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 DBX2Q6ZNG2 339 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 SKA1Q96BD8 255 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 CPEB1Q9BZB8 566 aaKnown RBP20.76■□□□□ 0.91
VTI1B-205ENST00000555543 RCOR3Q9P2K3 495 aaPredicted RBP20.76■□□□□ 0.91
VTI1B-205ENST00000555543 PCOLCE2Q9UKZ9 415 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 BTBD3Q9Y2F9 522 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 PCDHGB2Q9Y5G2 931 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 CHD8Q9HCK8 2581 aa20.76■□□□□ 0.91
VTI1B-205ENST00000555543 A0A1B0GTQ1 180 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 AREL1O15033 823 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 BUB1BO60566 1050 aaPredicted RBP20.75■□□□□ 0.91
VTI1B-205ENST00000555543 PEX11BO96011 259 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 ITIH2P19823 946 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 HNRNPA2B1P22626 353 aaKnown RBP20.75■□□□□ 0.91
VTI1B-205ENST00000555543 MAN1A1P33908 653 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 SIM1P81133 766 aaPredicted RBP20.75■□□□□ 0.91
VTI1B-205ENST00000555543 MESDQ14696 234 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 STAT4Q14765 748 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 SLC45A4Q5BKX6 768 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 KIAA1161Q6NSJ0 714 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 IQCHQ86VS3 1027 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 RAB7BQ96AH8 199 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 ELF4Q99607 663 aaPredicted RBP20.75■□□□□ 0.91
VTI1B-205ENST00000555543 CINPQ9BW66 212 aaPredicted RBP20.75■□□□□ 0.91
VTI1B-205ENST00000555543 GDF3Q9NR23 364 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 DKK3Q9UBP4 350 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 TRPM6Q9BX84 2022 aa20.75■□□□□ 0.91
VTI1B-205ENST00000555543 RAD51BO15315 384 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 MFSD11O43934 449 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 MAFKO60675 156 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 MTA2O94776 668 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 TIMP2P16035 220 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 CLDN2P57739 230 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 RPS21P63220 83 aaKnown RBP20.74■□□□□ 0.91
VTI1B-205ENST00000555543 SLC10A7Q0GE19 358 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 TMCO4Q5TGY1 634 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 GCNT7Q6ZNI0 430 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 CAMK1DQ8IU85 385 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 PCDH19Q8TAB3 1148 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 BAHD1Q8TBE0 780 aaPredicted RBP20.74■□□□□ 0.91
VTI1B-205ENST00000555543 SETD7Q8WTS6 366 aaKnown RBP20.74■□□□□ 0.91
VTI1B-205ENST00000555543 RFFLQ8WZ73 363 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 MRFAP1L1Q96HT8 127 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms