RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MTSS1O43312 755 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CACNG3O60359 315 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CLASP2O75122 1294 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 GCATO75600 419 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 STC2O76061 302 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 MYOGP15173 224 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 ERCC2P18074 760 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 HSPA9P38646 679 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 CARSP49589 748 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 TPI1P60174 286 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 SMAD3P84022 425 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 SLC7A5Q01650 507 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 GBE1Q04446 702 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 IFT88Q13099 833 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 PDK1Q15118 436 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 TCEA2Q15560 299 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 DUSP6Q16828 381 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CCDC92Q53HC0 331 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 FAM133BQ5BKY9 247 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 PPP6R3Q5H9R7 873 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 HP1BP3Q5SSJ5 553 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 RNASEH2BQ5TBB1 312 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 KAZNQ674X7 775 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 HIBCHQ6NVY1 386 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 TMCO3Q6UWJ1 677 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 PDZD4Q76G19 769 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 SPRED2Q7Z698 418 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CDKL3Q8IVW4 592 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 ARHGAP12Q8IWW6 846 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 DMRTC2Q8IXT2 367 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 PHACTR4Q8IZ21 702 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CPXM2Q8N436 756 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 DTWD1Q8N5C7 304 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 TAB3Q8N5C8 712 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 NPWQ8N729 165 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 GALNT11Q8NCW6 608 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 TBC1D31Q96DN5 1066 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 SNF8Q96H20 258 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 VAT1Q99536 393 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 MAK16Q9BXY0 300 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 FUT8Q9BYC5 575 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 MAGEB5Q9BZ81 275 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 BRINP2Q9C0B6 783 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 ADAM7Q9H2U9 754 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CATSPERBQ9H7T0 1116 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 ARFGAP3Q9NP61 516 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 ZNF446Q9NWS9 450 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 CHCHD3Q9NX63 227 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 FAM53CQ9NYF3 392 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 SHOC2Q9UQ13 582 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 HIF3AQ9Y2N7 669 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 SCN8AQ9UQD0 1980 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 REV3LO60673 3130 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 LOC100289279A0A1B0GTE1 492 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 A0A1W2PPC1 479 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 GRXCR1A8MXD5 290 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 CHADO15335 359 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 DAPK3O43293 454 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 LPXNO60711 386 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 PPFIA2O75334 1257 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 MOSPD3O75425 235 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 TBX18O95935 607 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 LRG1P02750 347 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 GARSP41250 739 aaKnown RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 IFNAR2P48551 515 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 MAPKAPK2P49137 400 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 CDR1P51861 262 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 NDST2P52849 883 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 EIF3EP60228 445 aaKnown RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 EFEMP1Q12805 493 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 GPM6BQ13491 265 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 AUHQ13825 339 aaKnown RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 MORF4L2Q15014 288 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 TRADDQ15628 312 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 C10orf120Q5SQS8 335 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 MPP7Q5T2T1 576 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 PLPP4Q5VZY2 271 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 ARMC3Q5W041 872 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 NADSYN1Q6IA69 706 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 NPNTQ6UXI9 565 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 CHST9Q7L1S5 443 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 TMC3Q7Z5M5 1100 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 TDHQ8IZJ6 230 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 GLIS1Q8NBF1 620 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 FBXO25Q8TCJ0 367 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 ZNF707Q96C28 371 aaPredicted RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 ZNF512Q96ME7 567 aaPredicted RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 TMEM121Q9BTD3 319 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 FRMD8Q9BZ67 464 aaPredicted RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 RNF38Q9H0F5 515 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 NEUROG2Q9H2A3 272 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 NOL6Q9H6R4 1146 aaKnown RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 MAN1C1Q9NR34 630 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 UTP6Q9NYH9 597 aaKnown RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 LMCD1Q9NZU5 365 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 PAK5Q9P286 719 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 SAE1Q9UBE0 346 aaPredicted RBP8.61□□□□□ -1.03
VPS29-203ENST00000546588 SLC12A6Q9UHW9 1150 aa8.61□□□□□ -1.03
VPS29-203ENST00000546588 XPO7Q9UIA9 1087 aaKnown RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms