RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GCATO75600 419 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 LEFTY1O75610 366 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 ADH1BP00325 375 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 CTSLP07711 333 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 NDUFV2P19404 249 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 HOXA6P31267 233 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 GKP32189 559 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 COILP38432 576 aaPredicted RBP17.33■□□□□ 0.37
LIG1-204ENST00000542460 KCNJ1P48048 391 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 NUBP1P53384 320 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 NRLP54845 237 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 GDF10P55107 478 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 RPS14P62263 151 aaKnown RBP17.33■□□□□ 0.37
LIG1-204ENST00000542460 CST6Q15828 149 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 ITPRIPL1Q6GPH6 555 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 NCEH1Q6PIU2 408 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 CCDC137Q6PK04 289 aaKnown RBP17.33■□□□□ 0.37
LIG1-204ENST00000542460 RASSF3Q86WH2 238 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 PGBD3Q8N328 593 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 ARRDC2Q8TBH0 407 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 PIP4K2CQ8TBX8 421 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 SPATA13Q96N96 652 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 OSBPL1AQ9BXW6 950 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 SLC25A51Q9H1U9 297 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 ATP13A3Q9H7F0 1226 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 NOD2Q9HC29 1040 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 GLOD4Q9HC38 313 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 SARDHQ9UL12 918 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 SCML1Q9UN30 329 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 TTC24A2A3L6 582 aaPredicted RBP17.32■□□□□ 0.36
LIG1-204ENST00000542460 CCDC188H7C350 402 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 GJB3O75712 270 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 DNTTP04053 509 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 CD68P34810 354 aaPredicted RBP17.32■□□□□ 0.36
LIG1-204ENST00000542460 PSMD8P48556 350 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 FNTAP49354 379 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 DSC2Q02487 901 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 WHAMMP3Q1A5X7 153 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 P3H1Q32P28 736 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 FAM182AQ5T1J6 154 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 TTC27Q6P3X3 843 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 GDPD4Q6W3E5 623 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 GSTA5Q7RTV2 222 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.32■□□□□ 0.36
LIG1-204ENST00000542460 CCDC89Q8N998 374 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 MDGA1Q8NFP4 955 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 CCDC110Q8TBZ0 833 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 VOPP1Q96AW1 172 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 IMP4Q96G21 291 aaKnown RBP17.32■□□□□ 0.36
LIG1-204ENST00000542460 ZNF641Q96N77 438 aaPredicted RBP17.32■□□□□ 0.36
LIG1-204ENST00000542460 SLC6A17Q9H1V8 727 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 FBXO4Q9UKT5 387 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 ZDBF2Q9HCK1 2354 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 KMT2EQ8IZD2 1858 aa17.32■□□□□ 0.36
LIG1-204ENST00000542460 KPNA3O00505 521 aaPredicted RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 IFNB1P01574 187 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SERPINF2P08697 491 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 ACADMP11310 421 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 NFKB1P19838 968 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 C5AR1P21730 350 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SERPINA4P29622 427 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SLC8A1P32418 973 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 ACTN2P35609 894 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CKAP4Q07065 602 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 BCL2L1Q07817 233 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 NIPAL4Q0D2K0 466 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SFSWAPQ12872 951 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 KIAA1324Q6UXG2 1013 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 ARHGEF18Q6ZSZ5 1173 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 MAML2Q8IZL2 1156 aaPredicted RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 PPP1R16AQ96I34 528 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 FCRL5Q96RD9 977 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SUV39H2Q9H5I1 410 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 RSPH14Q9UHP6 348 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 MUC6Q6W4X9 2439 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CCDC163A0A0D9SF12 145 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 MID1O15344 667 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 UGT2B4P06133 528 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CD86P42081 329 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CSTF1Q05048 431 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 ZNF805Q5CZA5 627 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CACUL1Q86Y37 369 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 CAMK1DQ8IU85 385 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SPATA4Q8NEY3 305 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 HCAR2Q8TDS4 363 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 GRK7Q8WTQ7 553 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 NSMCE3Q96MG7 304 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 DDX47Q9H0S4 455 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 GBA3Q9H227 469 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 KCNH6Q9H252 994 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 PABPC3Q9H361 631 aaKnown RBP17.31■□□□□ 0.36
LIG1-204ENST00000542460 DYRK4Q9NR20 520 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 PCDHGC4Q9Y5F7 938 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 MRFAP1Q9Y605 127 aa17.31■□□□□ 0.36
LIG1-204ENST00000542460 SHROOM3Q8TF72 1996 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 CKAP5Q14008 2032 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 SOCS5O75159 536 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 PIGNO95427 931 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 MMP2P08253 660 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 TDGF1P13385 188 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms