RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 TISP43B9A030 160 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 E9PMD0 336 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 K7ENP7 123 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TRIM38O00635 465 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PCDHGA12O60330 932 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SDC3O75056 442 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 USP12O75317 370 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 FSBPO95073 299 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 BAG4O95429 457 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TBX18O95935 607 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 AFPP02771 609 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 HMGB1P09429 215 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CLTAP09496 248 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 RNF224P0DH78 156 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CSH1P0DML2 217 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CSH2P0DML3 217 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 IRF1P10914 325 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 MBL2P11226 248 aaPredicted RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ODC1P11926 461 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 LMO2P25791 158 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 HNF1BP35680 557 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 MATR3P43243 847 aaKnown RBP eCLIP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ETV4P43268 484 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 EFNA5P52803 228 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CACNA2D1P54289 1103 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TMPRSS3P57727 454 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 RPL10AP62906 217 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CYP4F2P78329 520 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 GABREP78334 506 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 GAD2Q05329 585 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SSRP1Q08945 709 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 IFRD2Q12894 506 aaPredicted RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PDIA5Q14554 519 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 KCNB1Q14721 858 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CLCA4Q14CN2 919 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TGIF1Q15583 401 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CALCRLQ16602 461 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TBR1Q16650 682 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ZSCAN23Q3MJ62 389 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 BROXQ5VW32 411 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SPATA1Q5VX52 437 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 GRAMD4Q6IC98 578 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SDE2Q6IQ49 451 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 INO80CQ6PI98 192 aaPredicted RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TPGS1Q6ZTW0 290 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TMPRSS6Q8IU80 811 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 BBS7Q8IWZ6 715 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SRRM1Q8IYB3 904 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 DCP1BQ8IZD4 617 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ADGRF2Q8IZF7 708 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 THEM5Q8N1Q8 247 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 DCBLD1Q8N8Z6 715 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ZSWIM2Q8NEG5 633 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CADM4Q8NFZ8 388 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SPPL2BQ8TCT7 592 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SAP25Q8TEE9 199 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 KCNE4Q8WWG9 221 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 BIRC7Q96CA5 298 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 IFT74Q96LB3 600 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 MTMR9Q96QG7 549 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PKMYT1Q99640 499 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 GABRG3Q99928 467 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ORAI3Q9BRQ5 295 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 RNF26Q9BY78 433 aaPredicted RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 MRPL4Q9BYD3 311 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 BHMT2Q9H2M3 363 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 NELFAQ9H3P2 528 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 TMEM206Q9H813 350 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 SH3GLB2Q9NR46 395 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 STARD5Q9NSY2 213 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CATSPERZQ9NTU4 200 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 DNAJC17Q9NVM6 304 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 USP36Q9P275 1121 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 HSFX1Q9UBD0 423 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 FBXO10Q9UK96 956 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CLEC4EQ9ULY5 219 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 UBQLN1Q9UMX0 589 aaKnown RBP3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 CLCA2Q9UQC9 943 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PCDHGA1Q9Y5H4 931 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 STON1Q9Y6Q2 735 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 ADGRG4Q8IZF6 3080 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 FBN3Q75N90 2809 aa3.14□□□□□ -1.91
CHMP4A-208ENST00000534106 PCSK5Q92824 1860 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 KIF26AQ9ULI4 1882 aaPredicted RBP3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 TDRD15B5MCY1 1934 aaKnown RBP3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 PDZD2O15018 2839 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 NIPBLQ6KC79 2804 aaeCLIP3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 PRRC2CQ9Y520 2896 aaKnown RBP3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 A1L4Q6 167 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 CLEC18AA5D8T8 446 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 TMEM191CA6NGB0 347 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 FAM47DPA6NHR8 397 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 ANKRD63C9JTQ0 380 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 NEDD8-MDP1E9PL57 170 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 CLDN3O15551 220 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 COCHO43405 550 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 TSPAN3O60637 253 aa3.13□□□□□ -1.91
CHMP4A-208ENST00000534106 HIP1RO75146 1068 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms