RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SLC6A14Q9UN76 642 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 A0A1W2PPC4 97 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 PRR5-ARHGAP8B1AHC4 643 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 BCAT2O15382 392 aaPredicted RBP20.12■□□□□ 0.81
CPSF1-209ENST00000532725 ARHGAP6O43182 974 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 LATO43561 262 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 GNSP15586 552 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 CDKN2BP42772 138 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 NEK3P51956 506 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 ARHGAP8P85298 464 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 PARS2Q7L3T8 475 aaKnown RBP20.12■□□□□ 0.81
CPSF1-209ENST00000532725 SRLQ86TD4 932 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 KATNAL2Q8IYT4 538 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 RCOR2Q8IZ40 523 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 TXLNBQ8N3L3 684 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 CCDC112Q8NEF3 446 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 KRT35Q92764 455 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 CINPQ9BW66 212 aaPredicted RBP20.12■□□□□ 0.81
CPSF1-209ENST00000532725 DTLQ9NZJ0 730 aa20.12■□□□□ 0.81
CPSF1-209ENST00000532725 KNL1Q8NG31 2342 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 DMXL1Q9Y485 3027 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 A0A1B0GTW7 788 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 LNP1A1A4G5 178 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 GRID2IPA4D2P6 1211 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 ZRANB2O95218 330 aaKnown RBP eCLIP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 MAP3K6O95382 1288 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 ADRB3P13945 408 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 CCNCP24863 283 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 MARCKSL1P49006 195 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 RENBPP51606 427 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 PPP2CBP62714 309 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 PPP2CAP67775 309 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 HNRNPDQ14103 355 aaKnown RBP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 GRM3Q14832 879 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 IFI16Q16666 785 aaKnown RBP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 ODF2Q5BJF6 829 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 NEK5Q6P3R8 708 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 FBXL19Q6PCT2 694 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 TRIM69Q86WT6 500 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 PGBD5Q8N414 524 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 ZCCHC9Q8N567 271 aaKnown RBP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 TEX26Q8N6G2 289 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 HCAR2Q8TDS4 363 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 SNX19Q92543 992 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 FATE1Q969F0 183 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 NSMCE3Q96MG7 304 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 NUSAP1Q9BXS6 441 aaKnown RBP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 SUV39H2Q9H5I1 410 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 PREBQ9HCU5 417 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 DKK3Q9UBP4 350 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 TPX2Q9ULW0 747 aaKnown RBP20.11■□□□□ 0.81
CPSF1-209ENST00000532725 PCDHA3Q9Y5H8 950 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 FADS3Q9Y5Q0 445 aa20.11■□□□□ 0.81
CPSF1-209ENST00000532725 SPTBN4Q9H254 2564 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 APOL1O14791 398 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 MATN3O15232 486 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 CFIP05156 583 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 TIMP2P16035 220 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 ZFXP17010 805 aaPredicted RBP20.1■□□□□ 0.81
CPSF1-209ENST00000532725 MX2P20592 715 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 CTNNA1P35221 906 aaKnown RBP20.1■□□□□ 0.81
CPSF1-209ENST00000532725 PEX5P50542 639 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 AASDHQ4L235 1098 aaPredicted RBP20.1■□□□□ 0.81
CPSF1-209ENST00000532725 MARC1Q5VT66 337 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 SPOCD1Q6ZMY3 1216 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 EXD1Q8NHP7 514 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 NSMCE1Q8WV22 266 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 MAML1Q92585 1016 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 ZNF641Q96N77 438 aaPredicted RBP20.1■□□□□ 0.81
CPSF1-209ENST00000532725 TUBGCP5Q96RT8 1024 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.1■□□□□ 0.81
CPSF1-209ENST00000532725 CACNA1EQ15878 2313 aa20.1■□□□□ 0.81
CPSF1-209ENST00000532725 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 MACROD2A1Z1Q3 448 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 CDX4O14627 284 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 AP1G1O43747 822 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 RNGTTO60942 597 aaKnown RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 GJB3O75712 270 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 PIGNO95427 931 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 KRT10P13645 584 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 CR2P20023 1033 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 HSPA9P38646 679 aaKnown RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 SCNN1BP51168 640 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 CCZ1BP86790 482 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 CCZ1P86791 482 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 TTC7BQ86TV6 843 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 PRPF39Q86UA1 669 aaKnown RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 NT5DC3Q86UY8 548 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 RFX6Q8HWS3 928 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 CAMK1DQ8IU85 385 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-209ENST00000532725 LRRN4Q8WUT4 740 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 RAB7BQ96AH8 199 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 TM9SF3Q9HD45 589 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 FSCN3Q9NQT6 498 aa20.09■□□□□ 0.81
CPSF1-209ENST00000532725 A0A1W2PQU0 124 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 TTC24A2A3L6 582 aaPredicted RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ARHGAP33O14559 1287 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 AREL1O15033 823 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ENGP17813 658 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms