RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FEM1CQ96JP0 617 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 EMILIN2Q9BXX0 1053 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 SNX15Q9NRS6 342 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 SLC4A7Q9Y6M7 1214 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 C2orf71A6NGG8 1288 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 HIDE1A8MVS5 230 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 SCAMP3O14828 347 aaKnown RBP20.92■□□□□ 0.94
VPS28-209ENST00000528142 KLF11O14901 512 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 TIMM44O43615 452 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 GABRB3P28472 473 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 SEPT6Q14141 434 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 SLC14A2Q15849 920 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 PPM1JQ5JR12 505 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 OTUD6BQ8N6M0 293 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 MAB21L3Q8N8X9 362 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 DCDC2Q9UHG0 476 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 EMCNQ9ULC0 261 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 PLXNA4Q9HCM2 1894 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 CCDC85CA6NKD9 419 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 TLL1O43897 1013 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 TBL1XO60907 577 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 GLRA3O75311 464 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 ARHGEF15O94989 841 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 PAPSS2O95340 614 aaPredicted RBP20.92■□□□□ 0.94
VPS28-209ENST00000528142 C1RP00736 705 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 PAMP19021 973 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 BGNP21810 368 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 DNAJB1P25685 340 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 SERPINB8P50452 374 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 CSRP3P50461 194 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 CDK18Q07002 472 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 CYTH1Q15438 398 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 INSCQ1MX18 579 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 FSCBQ5H9T9 825 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 TSTD2Q5T7W7 516 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 FAM109BQ6ICB4 259 aaPredicted RBP20.92■□□□□ 0.94
VPS28-209ENST00000528142 ZC3HC1Q86WB0 502 aaKnown RBP20.92■□□□□ 0.94
VPS28-209ENST00000528142 CCDC63Q8NA47 563 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 HJURPQ8NCD3 748 aaPredicted RBP20.92■□□□□ 0.94
VPS28-209ENST00000528142 VPS39Q96JC1 886 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 HAUS2Q9NVX0 235 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 SIRPGQ9P1W8 387 aa20.92■□□□□ 0.94
VPS28-209ENST00000528142 MROH6A6NGR9 719 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CD160O95971 181 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 GLUD1P00367 558 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 GSRP00390 522 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 AHSGP02765 367 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 PRKCGP05129 697 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CR2P20023 1033 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CTNNB1P35222 781 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 ABCG1P45844 678 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 RGRP47804 291 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 RNF187Q5TA31 235 aaPredicted RBP20.91■□□□□ 0.94
VPS28-209ENST00000528142 CCDC121Q6ZUS5 278 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 HTR3DQ70Z44 454 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CMC1Q7Z7K0 106 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 ACVR1CQ8NER5 493 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 SPPL3Q8TCT6 385 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 SLC22A17Q8WUG5 538 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 TMA16Q96EY4 203 aaKnown RBP20.91■□□□□ 0.94
VPS28-209ENST00000528142 ATXN7L3BQ96GX2 97 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 NSMCE3Q96MG7 304 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 GPR22Q99680 433 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CINPQ9BW66 212 aaPredicted RBP20.91■□□□□ 0.94
VPS28-209ENST00000528142 KDM4CQ9H3R0 1056 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 RHOJQ9H4E5 214 aa20.91■□□□□ 0.94
VPS28-209ENST00000528142 CBX4O00257 560 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 BIRC5O15392 142 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 ZMPSTE24O75844 475 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 SERPINF2P08697 491 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 HLA-DPA1P20036 260 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 CDC25CP30307 473 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 ARF5P84085 180 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 N4BP2L1Q5TBK1 243 aaPredicted RBP20.9■□□□□ 0.94
VPS28-209ENST00000528142 DENND6AQ8IWF6 608 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 ELMOD1Q8N336 334 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 TRIB3Q96RU7 358 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 MECRQ9BV79 373 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 MUC3BQ9H195 1237 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 NOD2Q9HC29 1040 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 GGT7Q9UJ14 662 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 OR51B4Q9Y5P0 310 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 RANBP2P49792 3224 aaKnown RBP20.9■□□□□ 0.94
VPS28-209ENST00000528142 A0A1W2PRU2 124 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 GRXCR1A8MXD5 290 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 PLIN3O60664 434 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 LUC7L3O95232 432 aaKnown RBP20.9■□□□□ 0.94
VPS28-209ENST00000528142 IL1BP01584 269 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 BPGMP07738 259 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 GJA1P17302 382 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 HADHAP40939 763 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 GRM3Q14832 879 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 LACTB2Q53H82 288 aaPredicted RBP20.9■□□□□ 0.94
VPS28-209ENST00000528142 PLPP4Q5VZY2 271 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 RNF43Q68DV7 783 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 C16orf46Q6P387 395 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 TRPM8Q7Z2W7 1104 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 CARNMT1Q8N4J0 409 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 OR13J1Q8NGT2 312 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 POF1BQ8WVV4 589 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms