RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 PARP14Q460N5 1801 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 CCDC162PA2VCL2 907 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 NPHS1O60500 1241 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 CCNA2P20248 432 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 EIF2B2P49770 351 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 LAMTOR4Q0VGL1 99 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 TRAF2Q12933 501 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 AGKQ53H12 422 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 ABRAXAS1Q6UWZ7 409 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 KCNMB4Q86W47 210 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 ZC3H7AQ8IWR0 971 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 CENPLQ8N0S6 344 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 RNF149Q8NC42 400 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 ZUFSPQ96AP4 578 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 FEM1CQ96JP0 617 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 SCYL1Q96KG9 808 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 TSNARE1Q96NA8 513 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 PCYT2Q99447 389 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 C1orf50Q9BV19 199 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 RPF1Q9H9Y2 349 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 CCDC167Q9P0B6 97 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 PGAP2Q9UHJ9 254 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 CROTQ9UKG9 612 aa17.28■□□□□ 0.36
SQSTM1-211ENST00000506690 PHGDHO43175 533 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 SLC35E2BP0CK96 405 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 TMBIM6P55061 237 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 CD300CQ08708 224 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 IFRD2Q12894 506 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 ATP6AP1Q15904 470 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 TSTD2Q5T7W7 516 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 ATF7IP2Q5U623 682 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 EEF1DP3Q658K8 133 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 ZBTB8OSQ8IWT0 167 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 PYROXD2Q8N2H3 581 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 KCTD4Q8WVF5 259 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 ATG4CQ96DT6 458 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 FBXL20Q96IG2 436 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 B3GNT5Q9BYG0 378 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 LRRC4Q9HBW1 653 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 NRBP2Q9NSY0 501 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 GIN1Q9NXP7 522 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 BFARQ9NZS9 450 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 SEPT10Q9P0V9 454 aa17.27■□□□□ 0.36
SQSTM1-211ENST00000506690 NRP1O14786 923 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 MRASO14807 208 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 USP12O75317 370 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 CPNE6O95741 557 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 CLIC3O95833 236 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 SNRPB2P08579 225 aaKnown RBP17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 ETFBP38117 255 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 PGGT1BP53609 377 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 NME3Q13232 169 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 GADL1Q6ZQY3 521 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 CDR2LQ86X02 465 aaPredicted RBP17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 NETO2Q8NC67 525 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 OR13F1Q8NGS4 319 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 OLFM1Q99784 485 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 C9orf16Q9BUW7 83 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 XPR1Q9UBH6 696 aa17.27■□□□□ 0.35
SQSTM1-211ENST00000506690 CNOT3O75175 753 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SRP72O76094 671 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 DNAJB1P25685 340 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 GNL1P36915 607 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC7A2P52569 658 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 GNA12Q03113 381 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 TBCELQ5QJ74 424 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 FKBP1CQ5VVH2 108 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 IER5Q5VY09 327 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SNRNP48Q6IEG0 339 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SPRED1Q7Z699 444 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 ANKRD13AQ8IZ07 590 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 CCNYL1Q8N7R7 359 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 PCYOX1LQ8NBM8 494 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 PDPRQ8NCN5 879 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SHCBP1Q8NEM2 672 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC45A3Q96JT2 553 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC25A23Q9BV35 468 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 RPAP3Q9H6T3 665 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 CASS4Q9NQ75 786 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 IARS2Q9NSE4 1012 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 FAM49BQ9NUQ9 324 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 ATAD3AQ9NVI7 634 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 GMPR2Q9P2T1 348 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 COL11A1P12107 1806 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 AQP12BA6NM10 295 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 LACTBL1A8MY62 500 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 CLOCKO15516 846 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 NRP2O60462 931 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 NOL3O60936 208 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 RASAL1O95294 804 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 AP2A1O95782 977 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 MATN1P21941 496 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 MAP4P27816 1152 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 ARL4AP40617 200 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 ITGADQ13349 1161 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC12A1Q13621 1099 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 PPP1R26Q5T8A7 1209 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 JADE1Q6IE81 842 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 GALNT18Q6P9A2 607 aa17.26■□□□□ 0.35
SQSTM1-211ENST00000506690 IGFN1Q86VF2 1251 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms