RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 DNAJC28Q9NX36 388 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 SLC17A6Q9P2U8 582 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 DCTN4Q9UJW0 460 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 DNMT3LQ9UJW3 386 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 PCDHB12Q9Y5F1 795 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 COL4A6Q14031 1691 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 ZNF195O14628 629 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SLC7A4O43246 635 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 TLR5O60602 858 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 RAMP2O60895 175 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 CNTN5O94779 1100 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 LATS1O95835 1130 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 MOCS2O96007 188 aaPredicted RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 AHSGP02765 367 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 KRT16P08779 473 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 HOXB8P17481 243 aaPredicted RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 TPH1P17752 444 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 ATF6P18850 670 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SERPINB3P29508 390 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SLC26A3P40879 764 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SLC1A6P48664 564 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 NUMBP49757 651 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 GATMP50440 423 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SERPINH1P50454 418 aaKnown RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 CCL23P55773 120 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 POU4F1Q01851 419 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SF3A3Q12874 501 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP4-214ENST00000491791 DUSP4Q13115 394 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 TUBB3Q13509 450 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 RFTN1Q14699 578 aaPredicted RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 PSMD5Q16401 504 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 PPM1JQ5JR12 505 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 WASHC2DQ5SRD0 308 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 METTL21CQ5VZV1 264 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 NADSYN1Q6IA69 706 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 ZYG11AQ6WRX3 759 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 CHST9Q7L1S5 443 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 OTOP2Q7RTS6 562 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 CEP57Q86XR8 500 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 WDR75Q8IWA0 830 aaKnown RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 FBXO22Q8NEZ5 403 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 IPMKQ8NFU5 416 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 STYXQ8WUJ0 223 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 BCL7CQ8WUZ0 217 aaPredicted RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 SREK1Q8WXA9 508 aaKnown RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 PLD4Q96BZ4 506 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 IGSF21Q96ID5 467 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 FEM1CQ96JP0 617 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 PGLYRP2Q96PD5 576 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SORT1Q99523 831 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 APOL2Q9BQE5 337 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 C20orf27Q9GZN8 174 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 PDFQ9HBH1 243 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 IARS2Q9NSE4 1012 aaKnown RBP10.86□□□□□ -0.67
USP4-214ENST00000491791 OXSMQ9NWU1 459 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 STOML2Q9UJZ1 356 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 NUDT5Q9UKK9 219 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SLC27A5Q9Y2P5 690 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 SLC4A7Q9Y6M7 1214 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 NCOR1O75376 2440 aa10.86□□□□□ -0.67
USP4-214ENST00000491791 A0A087X1B8 175 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 SLC12A8A0AV02 714 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ZNF840PA6NDX5 716 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 TBKBP1A7MCY6 615 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ZBBXA8MT70 800 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 H3BNC9 293 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 J3KR12 359 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 FCHO1O14526 889 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ACSL4O60488 711 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 TRIM13O60858 407 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 WISP3O95389 354 aaPredicted RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 TBX18O95935 607 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 SLC35E2BP0CK96 405 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 RALBP11234 206 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 HMGA1P17096 107 aaKnown RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 HLA-DPA1P20036 260 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 TACR2P21452 398 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 IBSPP21815 317 aaPredicted RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 CCND1P24385 295 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ATP5C1P36542 298 aaKnown RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 SERPINB5P36952 375 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 LEPRP48357 1165 aaKnown RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 CDH4P55283 916 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ABCE1P61221 599 aaKnown RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 DSG1Q02413 1049 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 SLC10A7Q0GE19 358 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 SLC12A1Q13621 1099 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 GRM3Q14832 879 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 POLD3Q15054 466 aaPredicted RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 TSNAXIP1Q2TAA8 658 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 MGAT5BQ3V5L5 792 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 RABGAP1LQ5R372 815 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 TSTD2Q5T7W7 516 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 WLSQ5T9L3 541 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 PPP2R2DQ66LE6 453 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 RAP1GAP2Q684P5 730 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 NEPROQ6NW34 567 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 ESRP1Q6NXG1 681 aaKnown RBP10.85□□□□□ -0.67
USP4-214ENST00000491791 C16orf46Q6P387 395 aa10.85□□□□□ -0.67
USP4-214ENST00000491791 CNKSR3Q6P9H4 555 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms