RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 DNAJC17Q9NVM6 304 aaKnown RBP7.03□□□□□ -1.28
HDAC3-209ENST00000486618 WSB2Q9NYS7 404 aaPredicted RBP7.03□□□□□ -1.28
HDAC3-209ENST00000486618 COL6A6A6NMZ7 2263 aa7.03□□□□□ -1.28
HDAC3-209ENST00000486618 ATP8B3O60423 1300 aa7.02□□□□□ -1.28
HDAC3-209ENST00000486618 SPTA1P02549 2419 aa7.02□□□□□ -1.28
HDAC3-209ENST00000486618 NEDD8-MDP1E9PL57 170 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 KIAA0391O15091 583 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SMAD7O15105 426 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 NPC1O15118 1278 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 RRP8O43159 456 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 COCHO43405 550 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 TNFSF14O43557 240 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 CACNG3O60359 315 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 TMEM127O75204 238 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PRPF6O94906 941 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SNX4O95219 450 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 THEGLP0DJG4 465 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 HLA-EP13747 358 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GAP43P17677 238 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PTPN1P18031 435 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 LONP1P36776 959 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 TNNT3P45378 269 aaPredicted RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ASMTP46597 345 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 TUBP50607 506 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GTF2A1P52655 376 aaPredicted RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 KIF11P52732 1056 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ZBTB16Q05516 673 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GOLGA8FQ08AF8 430 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GOLGA8DPQ0D2H9 430 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ALCAMQ13740 583 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GRM3Q14832 879 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 HLA-BQ31612 363 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 INAVAQ3KP66 663 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 VWA3BQ502W6 1294 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 RPS26P11Q5JNZ5 115 aaPredicted RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 DCAF12L1Q5VU92 463 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SNX30Q5VWJ9 437 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PAOXQ6QHF9 649 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 HTR3DQ70Z44 454 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SLC9B2Q86UD5 537 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SFR1Q86XK3 245 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 DTX1Q86Y01 620 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SHISA5Q8N114 240 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ZSWIM2Q8NEG5 633 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 OR6B3Q8NGW1 331 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 FAM76AQ8TAV0 307 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PIP4K2CQ8TBX8 421 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 UCMAQ8WVF2 138 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 TEKT4Q8WW24 435 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ACOX2Q99424 681 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 NUP58Q9BVL2 599 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 YIPF2Q9BWQ6 316 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 BBS2Q9BXC9 721 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 CAPS2Q9BXY5 557 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 MTMR12Q9C0I1 747 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PCED1AQ9H1Q7 454 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 NCOR1P1Q9H4R4 102 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 IL21RQ9HBE5 538 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 PDE11AQ9HCR9 933 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 INTS13Q9NVM9 706 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ETAA1Q9NY74 926 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 CHORDC1Q9UHD1 332 aaPredicted RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 SIX4Q9UIU6 781 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 LSM7Q9UK45 103 aaKnown RBP7.02□□□□□ -1.29
HDAC3-209ENST00000486618 AP4E1Q9UPM8 1137 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 RAD54BQ9Y620 910 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 ZNF462Q96JM2 2506 aa7.02□□□□□ -1.29
HDAC3-209ENST00000486618 GOLGA8IPA6NC78 632 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 ZNF233A6NK53 670 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 GOLGA8JA6NMD2 632 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 H3BQV1 296 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TRIM24O15164 1050 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 ZBTB14O43829 449 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TACC1O75410 805 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 GCNT3O95395 438 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TGDSO95455 350 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 FGFR1OPO95684 399 aaKnown RBP7.01□□□□□ -1.29
HDAC3-209ENST00000486618 BMP15O95972 392 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 DNTTP04053 509 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 PRB1P04280 392 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 APOA4P06727 396 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 IRF1P10914 325 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 ACADMP11310 421 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 CDK4P11802 303 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 PLA2G2AP14555 144 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TYRP14679 529 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 RAB6AP20340 208 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 HOXC12P31275 282 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 HNF1BP35680 557 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 SKIV2L2P42285 1042 aaKnown RBP7.01□□□□□ -1.29
HDAC3-209ENST00000486618 SEPHS1P49903 392 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 AFF3P51826 1226 aaKnown RBP7.01□□□□□ -1.29
HDAC3-209ENST00000486618 NUCB2P80303 420 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 PPP1R7Q15435 360 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 SMAD1Q15797 465 aaKnown RBP7.01□□□□□ -1.29
HDAC3-209ENST00000486618 CCDC157Q569K6 752 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 DYMQ7RTS9 669 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TMPRSS12Q86WS5 348 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 GPD1LQ8N335 351 aa7.01□□□□□ -1.29
HDAC3-209ENST00000486618 TNIP2Q8NFZ5 429 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms