RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PCSK1NQ9UHG2 260 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 SCML1Q9UN30 329 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 PCDHB1Q9Y5F3 818 aa12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 TEP1Q99973 2627 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 A0A0A6YYK5 440 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 TARSL2A2RTX5 802 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 SRGAP2O75044 1071 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 CLDN11O75508 207 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 LRIG2O94898 1065 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 PROSCO94903 275 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 DNTTP04053 509 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 MPOP05164 745 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 TCF4P15884 667 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 NNMTP40261 264 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ARHGAP25P42331 645 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 LSSP48449 732 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 VAV2P52735 878 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 PLK1P53350 603 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 HADHBP55084 474 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 RPS14P62263 151 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 KRT83P78385 493 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ECT2LQ008S8 904 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 SLC25A11Q02978 314 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 SFSWAPQ12872 951 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 BNIP3Q12983 259 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF177Q13360 481 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 UBAP2LQ14157 1087 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ALFQ53S48 1182 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 C6orf132Q5T0Z8 1188 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF776Q68DI1 518 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 PYROXD2Q8N2H3 581 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF366Q8N895 744 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 EXD3Q8N9H8 876 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 TBC1D31Q96DN5 1066 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 MRGPRX3Q96LB0 322 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 EPAS1Q99814 870 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 MAGEB5Q9BZ81 275 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ZYG11BQ9C0D3 744 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 RSPH9Q9H1X1 276 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 SGK2Q9HBY8 427 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 TFR2Q9UP52 801 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 NEU3Q9UQ49 428 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 ERVW-1Q9UQF0 538 aa12.15□□□□□ -0.46
SQSTM1-206ENST00000466342 TDRD6O60522 2096 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 NBPF19A0A087WUL8 3843 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 A0A1W2PPC4 97 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 RCCD1A6NED2 376 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM72CH0Y354 149 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 SUV39H1O43463 412 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 RNASEH1O60930 286 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 CNTN5O94779 1100 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 WNT1P04628 370 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 IGHV4-34P06331 123 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 IL1R2P27930 398 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 EPHA8P29322 1005 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 HTR7P34969 479 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 ARRB1P49407 418 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 GABREP78334 506 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 CCZ1BP86790 482 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 CCZ1P86791 482 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 SULT2A1Q06520 285 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 MESDQ14696 234 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 HADHQ16836 314 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 TTC31Q49AM3 519 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 BOLA3Q53S33 107 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM72AQ5TYM5 149 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 KIAA0895LQ68EN5 471 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM72DQ6L9T8 149 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 CXorf57Q6NSI4 855 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 XKR5Q6UX68 686 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 KIAA1328Q86T90 577 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 SETD3Q86TU7 594 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM72BQ86X60 149 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 TEKT4Q8WW24 435 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 DESI2Q9BSY9 194 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 DHX35Q9H5Z1 703 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 RETREG1Q9H6L5 497 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 POLR1BQ9H9Y6 1135 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 GPATCH2LQ9NWQ4 482 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 MPP6Q9NZW5 540 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 ZNF212Q9UDV6 495 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 NCKAP1Q9Y2A7 1128 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 TBC1D30Q9Y2I9 924 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 MYO9AB2RTY4 2548 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 BSNQ9UPA5 3926 aa12.14□□□□□ -0.47
SQSTM1-206ENST00000466342 EDDM13A0A1B0GTR0 161 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 TMEM110-MUSTN1A8MSY1 372 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 BTNL10A8MVZ5 291 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 PJA2O43164 708 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 NRDCO43847 1150 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CREB3O43889 395 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SIN3BO75182 1162 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 USP12O75317 370 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 RHOQP17081 205 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CD38P28907 300 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SSR1P43307 286 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 NOP2P46087 812 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 RXRGP48443 463 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 VASPP50552 380 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms