RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SLC39A8Q9C0K1 460 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 ZWILCHQ9H900 591 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 PDFQ9HBH1 243 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 FZD3Q9NPG1 666 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 KLK13Q9UKR3 277 aa21.53■■□□□ 1.04
HMGB3-205ENST00000455596 NEMP1O14524 444 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 CBFA2T2O43439 604 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 TSPAN6O43657 245 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 PRAMEF11O60813 436 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 THEGLP0DJG4 465 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 EPHA8P29322 1005 aaPredicted RBP21.52■■□□□ 1.04
HMGB3-205ENST00000455596 ABL2P42684 1182 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 HCAR3P49019 387 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 CYTH1Q15438 398 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 ST3GAL2Q16842 350 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 ALKBH5Q6P6C2 394 aaKnown RBP21.52■■□□□ 1.04
HMGB3-205ENST00000455596 UNQ6494/PRO21346Q6UXR6 183 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 FAM174AQ8TBP5 190 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 VOPP1Q96AW1 172 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 ARHGEF26Q96DR7 871 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 TOR4AQ9NXH8 423 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 LHX3Q9UBR4 397 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 FTSJ1Q9UET6 329 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 MSRB2Q9Y3D2 182 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 MFHAS1Q9Y4C4 1052 aa21.52■■□□□ 1.04
HMGB3-205ENST00000455596 GOLGA8CPA6NN73 597 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 C1QTNF9BB2RNN3 333 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 J3KR12 359 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 ATXN1LP0C7T5 689 aaKnown RBP21.51■■□□□ 1.03
HMGB3-205ENST00000455596 C1QTNF9P0C862 333 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 PAPOLAP51003 745 aaKnown RBP21.51■■□□□ 1.03
HMGB3-205ENST00000455596 BOLA3Q53S33 107 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 CCDC122Q5T0U0 273 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 NUP85Q9BW27 656 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 CPEB1Q9BZB8 566 aaKnown RBP21.51■■□□□ 1.03
HMGB3-205ENST00000455596 TSPY26PQ9H489 355 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 CWC15Q9P013 229 aaKnown RBP21.51■■□□□ 1.03
HMGB3-205ENST00000455596 IP6K2Q9UHH9 426 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 ANAPC7Q9UJX3 599 aa21.51■■□□□ 1.03
HMGB3-205ENST00000455596 FAM221BA6H8Z2 402 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 A6NNZ2 444 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 H3BRJ5 948 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 PAK4O96013 591 aaPredicted RBP21.5■■□□□ 1.03
HMGB3-205ENST00000455596 CYP1A2P05177 515 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 PROS1P07225 676 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 IL1R2P27930 398 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 ARL4AP40617 200 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 CLDN2P57739 230 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 BNIP3Q12983 259 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 SGCGQ13326 291 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 TRIM14Q14142 442 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 FGL2Q14314 439 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 GRM3Q14832 879 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 DPYSL2Q16555 572 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 SMTNL2Q2TAL5 461 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 AFMIDQ63HM1 303 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 GCNT7Q6ZNI0 430 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 TTC7BQ86TV6 843 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 NIPA2Q8N8Q9 360 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 OR13H1Q8NG92 308 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 EXOC2Q96KP1 924 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 TMEM121BQ9BXQ6 578 aaPredicted RBP21.5■■□□□ 1.03
HMGB3-205ENST00000455596 CALN1Q9BXU9 219 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 SP110Q9HB58 689 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 ITM2BQ9Y287 266 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 HS3ST3A1Q9Y663 406 aa21.5■■□□□ 1.03
HMGB3-205ENST00000455596 DFFAO00273 331 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 HNRNPH3P31942 346 aaKnown RBP21.49■■□□□ 1.03
HMGB3-205ENST00000455596 DPYSQ14117 519 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 SPECC1LQ69YQ0 1117 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 ABI3BPQ7Z7G0 1075 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 ARHGAP12Q8IWW6 846 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 LZTR1Q8N653 840 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 EID2Q8N6I1 236 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 NPWQ8N729 165 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 HSPH1Q92598 858 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 GATA6Q92908 595 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 BTBD6Q96KE9 485 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.49■■□□□ 1.03
HMGB3-205ENST00000455596 DKK3Q9UBP4 350 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 GGT7Q9UJ14 662 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 TPRP12270 2363 aaKnown RBP21.49■■□□□ 1.03
HMGB3-205ENST00000455596 ACACBO00763 2458 aa21.49■■□□□ 1.03
HMGB3-205ENST00000455596 IGLON5A6NGN9 336 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 INSIG1O15503 277 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 PALMO75781 387 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 DKK1O94907 266 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 LDOC1O95751 146 aaPredicted RBP21.48■■□□□ 1.03
HMGB3-205ENST00000455596 RARAP10276 462 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 TCF4P15884 667 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 PTAR1Q7Z6K3 402 aaPredicted RBP21.48■■□□□ 1.03
HMGB3-205ENST00000455596 DCP2Q8IU60 420 aaKnown RBP21.48■■□□□ 1.03
HMGB3-205ENST00000455596 TEKT4Q8WW24 435 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 ASB12Q8WXK4 309 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 CNDP2Q96KP4 475 aaKnown RBP21.48■■□□□ 1.03
HMGB3-205ENST00000455596 LENG8Q96PV6 779 aaPredicted RBP21.48■■□□□ 1.03
HMGB3-205ENST00000455596 C1QTNF2Q9BXJ5 285 aa21.48■■□□□ 1.03
HMGB3-205ENST00000455596 MYO1FO00160 1098 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 AREL1O15033 823 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 SPINT1O43278 529 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms