RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 VAT1Q99536 393 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 PKP2Q99959 881 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 SH3GL3Q99963 347 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 OSBPL2Q9H1P3 480 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 GLOD4Q9HC38 313 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 ZDHHC7Q9NXF8 308 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 CCDC167Q9P0B6 97 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 C15orf38-AP3S2A0A0A6YYH1 394 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 MAFKO60675 156 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 CSPG5O95196 566 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 ITGB1P05556 798 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 RALGDSQ12967 914 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 ARPINQ7Z6K5 226 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 C14orf80Q86SX3 495 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 LINC00523Q86TU6 105 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 PIP4K2CQ8TBX8 421 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 NMD3Q96D46 503 aaKnown RBP13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 KLHL5Q96PQ7 755 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 SERPINI1Q99574 410 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 SPON1Q9HCB6 807 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 ZBTB26Q9HCK0 441 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 PSMD13Q9UNM6 376 aa13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 AAR2Q9Y312 384 aaKnown RBP13.7□□□□□ -0.22
HERPUD1-204ENST00000439977 PRDX6P30041 224 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 AIF1P55008 147 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 NSUN2Q08J23 767 aaKnown RBP eCLIP13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 PCBP1Q15365 356 aaKnown RBP eCLIP13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 NRF1Q16656 503 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 AGMOQ6ZNB7 445 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 PPHLN1Q8NEY8 458 aaKnown RBP13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 OR10T2Q8NGX3 314 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 CASP10Q92851 521 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 EXT2Q93063 718 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 OLFM1Q99784 485 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 FBXO5Q9UKT4 447 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 TCAF2A6NFQ2 919 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 OR51F1A6NGY5 319 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 DNAJA2O60884 412 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 ZNF865P0CJ78 1059 aaPredicted RBP13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 FGFR3P22607 806 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 NME5P56597 212 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 CLEC6AQ6EIG7 209 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 PGAP3Q96FM1 320 aaPredicted RBP13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 SLC39A3Q9BRY0 314 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 CENPKQ9BS16 269 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 EFCAB1Q9HAE3 211 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 TRPC7Q9HCX4 862 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 CDH9Q9ULB4 789 aa13.69□□□□□ -0.22
HERPUD1-204ENST00000439977 TTC3P53804 2025 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 TRPA1O75762 1119 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 APOA4P06727 396 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 NELFEP18615 380 aaKnown RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CHN2P52757 468 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 C1QTNF8P60827 252 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 OGFRL1Q5TC84 451 aaPredicted RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 NEPROQ6NW34 567 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 UGT2A3Q6UWM9 527 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CXCL17Q6UXB2 119 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 APLFQ8IW19 511 aaPredicted RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 OR9I1Q8NGQ6 314 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 ATP6V1E2Q96A05 226 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CNDP1Q96KN2 507 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 AP5M1Q9H0R1 490 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 MRPL46Q9H2W6 279 aaKnown RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 AGO3Q9H9G7 860 aaKnown RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 GMPR2Q9P2T1 348 aaKnown RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 ANKRD6Q9Y2G4 727 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CCDC160A6NGH7 325 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 C9JVG2 144 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 H2AFYO75367 372 aaKnown RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 GJB3O75712 270 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CCDC166P0CW27 439 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 ME2P23368 584 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CD151P48509 253 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CSRP3P50461 194 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 PTK2BQ14289 1009 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 PITRM1Q5JRX3 1037 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 CYP2R1Q6VVX0 501 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 SCN4BQ8IWT1 228 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 RYBPQ8N488 228 aaPredicted RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 GTF3C2Q8WUA4 911 aaPredicted RBP13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 ANKRD49Q8WVL7 239 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 MRGPRX2Q96LB1 330 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 FAM192AQ9GZU8 254 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 NCKIPSDQ9NZQ3 722 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 MID2Q9UJV3 735 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 NEU3Q9UQ49 428 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 TCAF1Q9Y4C2 921 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 RAD54BQ9Y620 910 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 SBF1O95248 1867 aa13.68□□□□□ -0.22
HERPUD1-204ENST00000439977 SDHDO14521 159 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 PEX1O43933 1283 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 CRTAMO95727 393 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 SPATA31D3P0C874 917 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 CPB1P15086 417 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 GRIK1P39086 918 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 PTPRCAPQ14761 206 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 FSCN1Q16658 493 aaKnown RBP13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 UPP1Q16831 310 aa13.67□□□□□ -0.22
HERPUD1-204ENST00000439977 INTS6LQ5JSJ4 861 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms