RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NTAN1Q96AB6 310 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 TRIM43Q96BQ3 446 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-207ENST00000429896 SMG9Q9H0W8 520 aaKnown RBP13.06□□□□□ -0.32
PTCH1-207ENST00000429896 RNF112Q9ULX5 631 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 ELFN1P0C7U0 828 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 FGFR3P22607 806 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 ELP6Q0PNE2 266 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 SCARA3Q6AZY7 606 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 DTX3LQ8TDB6 740 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 ETNK1Q9HBU6 452 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.06□□□□□ -0.32
PTCH1-207ENST00000429896 MAP10Q9P2G4 905 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 A0A0U1RQJ8 604 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 A0A1W2PQ67 120 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 DDX5P17844 614 aaKnown RBP13.06□□□□□ -0.32
PTCH1-207ENST00000429896 CSKP41240 450 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 GALNT3Q14435 633 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 HFE2Q6ZVN8 426 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 TUBB6Q9BUF5 446 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 IL22Q9GZX6 179 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 TNKS2Q9H2K2 1166 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 EVLQ9UI08 416 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-207ENST00000429896 ERVW-1Q9UQF0 538 aa13.06□□□□□ -0.32
PTCH1-207ENST00000429896 HAUS5O94927 633 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ITGB1P05556 798 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 CFHP08603 1231 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 IFNEQ86WN2 208 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 OR52K1Q8NGK4 314 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 TRIM49D1C9J1S8 452 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 VAPBO95292 243 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 EDN1P05305 212 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 PTPN3P26045 913 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 MIER2Q8N344 545 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 P2RY11Q96G91 374 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ELK3P41970 407 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ARFIP2P53365 341 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 OCA2Q04671 838 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 SHHQ15465 462 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 AHI1Q8N157 1196 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 TSTD1Q8NFU3 115 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 INPP5DQ92835 1189 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 PANX3Q96QZ0 392 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 CATSPERZQ9NTU4 200 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 GRID1Q9ULK0 1009 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 FCF1Q9Y324 198 aaKnown RBP13.05□□□□□ -0.32
PTCH1-207ENST00000429896 WDR90Q96KV7 1748 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 POP4O95707 220 aaKnown RBP13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ETS1P14921 441 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 MZF1P28698 734 aaPredicted RBP13.05□□□□□ -0.32
PTCH1-207ENST00000429896 CD151P48509 253 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 KCNQ1P51787 676 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 CDK16Q00536 496 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 TRADDQ15628 312 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 STK40Q8N2I9 435 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 HEPHQ9BQS7 1158 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 GLOD4Q9HC38 313 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ZDHHC7Q9NXF8 308 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 PCDHGB4Q9UN71 923 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 EFR3BQ9Y2G0 817 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 REXO2Q9Y3B8 237 aaKnown RBP13.05□□□□□ -0.32
PTCH1-207ENST00000429896 PCDHB9Q9Y5E1 797 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 ATG13O75143 517 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 UGT2B4P06133 528 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 SMYD5Q6GMV2 418 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 C15orf39Q6ZRI6 1047 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 C4orf33Q8N1A6 199 aa13.05□□□□□ -0.32
PTCH1-207ENST00000429896 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTCH1-207ENST00000429896 FSCN2O14926 492 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 RFPL2O75678 378 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 CCDC159P0C7I6 412 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ZSCAN5DPP0CG00 497 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 PECAM1P16284 738 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-207ENST00000429896 MAPK9P45984 424 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ATXN1P54253 815 aaKnown RBP13.04□□□□□ -0.32
PTCH1-207ENST00000429896 CAMK2GQ13555 558 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-207ENST00000429896 SLC29A2Q14542 456 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ITPRIPL2Q3MIP1 535 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 TMEM240Q5SV17 173 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 CYP2S1Q96SQ9 504 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 SPATS2LQ9NUQ6 558 aaKnown RBP13.04□□□□□ -0.32
PTCH1-207ENST00000429896 SELENONQ9NZV5 590 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 LRRC72A6NJI9 287 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 FGF1P05230 155 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 APOA4P06727 396 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 PYGBP11216 843 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ITGB6P18564 788 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 CNTFP26441 200 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 NOMO1Q15155 1222 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 NLRP14Q86W24 1093 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 TRAPPC5Q8IUR0 188 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 LRRN4CLQ8ND94 238 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ZNF576Q9H609 170 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ANKZF1Q9H8Y5 726 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 GGA2Q9UJY4 613 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 TBX21Q9UL17 535 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 TIE1P35590 1138 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 ZNF470Q6ECI4 717 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 AFTPHQ6ULP2 937 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 LAYNQ6UX15 382 aa13.04□□□□□ -0.32
PTCH1-207ENST00000429896 PATL1Q86TB9 770 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms