RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 AP1G1O43747 822 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 CREB3O43889 395 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 CSO75390 466 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 CSF2P04141 144 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 ALPPL2P10696 532 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 JUNDP17535 347 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 IGFALSP35858 605 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 NSFP46459 744 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 HNRNPKP61978 463 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP4-204ENST00000416417 RPL7AP62424 266 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 E2F1Q01094 437 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 NRG1Q02297 640 aaPredicted RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 GUSBP11Q6P575 273 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 GDPD4Q6W3E5 623 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 LRRC69Q6ZNQ3 347 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 TTC7BQ86TV6 843 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 PARGQ86W56 976 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 IFI44Q8TCB0 444 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 BAP1Q92560 729 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 ISG20Q96AZ6 181 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 HMCESQ96FZ2 354 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 MAGEH1Q9H213 219 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 MBNL1Q9NR56 388 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 HPCAL4Q9UM19 191 aa11.74□□□□□ -0.53
USP4-204ENST00000416417 PMS2P1A4D2B8 440 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 AQP9O43315 295 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 TSPAN6O43657 245 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 USP12O75317 370 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 GCATO75600 419 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 PIGNO95427 931 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 POP4O95707 220 aaKnown RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 GSRP00390 522 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 PRKCGP05129 697 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 TPM2P07951 284 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 CELA2BP08218 269 aaPredicted RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 NME1P15531 152 aaKnown RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 TGM2P21980 687 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 EPHB2P29323 1055 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 RABIFP47224 123 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 PFN3P60673 137 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 SNRPD1P62314 119 aaKnown RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 OGDHQ02218 1023 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 CDCP2Q5VXM1 449 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 TRIM72Q6ZMU5 477 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 MON1BQ7L1V2 547 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 EFL1Q7Z2Z2 1120 aaKnown RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 SLFN11Q7Z7L1 901 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 NEK11Q8NG66 645 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 MAPK15Q8TD08 544 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 FGF11Q92914 225 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 MCEEQ96PE7 176 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 LENG8Q96PV6 779 aaPredicted RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 ABCG4Q9H172 646 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 PRORYQ9H606 182 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 TAS2R14Q9NYV8 317 aa11.73□□□□□ -0.53
USP4-204ENST00000416417 SMG1Q96Q15 3661 aaKnown RBP11.73□□□□□ -0.53
USP4-204ENST00000416417 TCRBV5S1A1TA0A578 114 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 NEMP2A6NFY4 417 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 EIF4E1BA6NMX2 242 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 RASA4BC9J798 803 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 AREL1O15033 823 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 RRP8O43159 456 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 RASA4O43374 803 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 ZIC2O95409 532 aaPredicted RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 TIMP2P16035 220 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 ETFBP38117 255 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 RHOAP61586 193 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 GABREP78334 506 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 UBXN1Q04323 297 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 CYTH1Q15438 398 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 TBC1D25Q3MII6 688 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 PERM1Q5SV97 790 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 DNAJC24Q6P3W2 148 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 PHF13Q86YI8 300 aaPredicted RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 DCP2Q8IU60 420 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 SPACA3Q8IXA5 215 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 PLPP6Q8IY26 295 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 RTL3Q8N8U3 475 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 SNIP1Q8TAD8 396 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 CENPTQ96BT3 561 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 IFT43Q96FT9 208 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 CELF6Q96J87 481 aaKnown RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 FCRL3Q96P31 734 aaPredicted RBP11.72□□□□□ -0.53
USP4-204ENST00000416417 AGPAT1Q99943 283 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 TMEM51Q9NW97 253 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 FZD10Q9ULW2 581 aa11.72□□□□□ -0.53
USP4-204ENST00000416417 A0A1W2PNU3 283 aaPredicted RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 SIGLEC16A6NMB1 481 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 LGALS16A8MUM7 142 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 TMCO5BA8MYB1 307 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 H3BM21 787 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 J3KR12 359 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 MUSKO15146 869 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 ATMINO43313 823 aaPredicted RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 ACTN2P35609 894 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 ADKP55263 362 aaKnown RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 GEMIN4P57678 1058 aaKnown RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 CXADRP78310 365 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 C1QBPQ07021 282 aaKnown RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 KLHL40Q2TBA0 621 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms