RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.66□□□□□ -1.5
CSDE1-202ENST00000339438 TCRBV3S1A0A5B6 114 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 RNF103O00237 685 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 KCNH1O95259 989 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 ALOX5P09917 674 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 PRKCHP24723 683 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 POLD2P49005 469 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 HARS2P49590 506 aaKnown RBP5.66□□□□□ -1.5
CSDE1-202ENST00000339438 FLOT2Q14254 428 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 DLG2Q15700 870 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 PCSK7Q16549 785 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 IRAK1BP1Q5VVH5 260 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 UGT3A1Q6NUS8 523 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 LYPD8Q6UX82 237 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 RHPN2Q8IUC4 686 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 CALML6Q8TD86 181 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 PDCD6IPQ8WUM4 868 aaKnown RBP5.66□□□□□ -1.5
CSDE1-202ENST00000339438 SNX19Q92543 992 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 RILPQ96NA2 401 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 YME1L1Q96TA2 773 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 FERMT1Q9BQL6 677 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 ALOXE3Q9BYJ1 711 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 HAPLN2Q9GZV7 340 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 SEMA6AQ9H2E6 1030 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 ACAD9Q9H845 621 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 RNF146Q9NTX7 359 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 GDAP2Q9NXN4 497 aa5.66□□□□□ -1.5
CSDE1-202ENST00000339438 A0A0X1KG70 313 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TCRBV5S1A1TA0A578 114 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ZBTB39O15060 712 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 DCXO43602 365 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 S100BP04271 92 aaPredicted RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 M6PRP20645 277 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SSTR3P32745 418 aaPredicted RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TRAF2Q12933 501 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 NFX1Q12986 1120 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SLC9B1Q4ZJI4 515 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 STXBP5Q5T5C0 1151 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 FAXCQ5TGI0 409 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 UBE2UQ5VVX9 321 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C1orf186Q6ZWK4 172 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CHSY3Q70JA7 882 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ZNF720Q7Z2F6 126 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TPH2Q8IWU9 490 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 PPIL6Q8IXY8 311 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 COLGALT2Q8IYK4 626 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 DAW1Q8N136 415 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ANKFN1Q8N957 763 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 GSDMBQ8TAX9 411 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 BRSK1Q8TDC3 778 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C17orf80Q9BSJ5 609 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C1orf50Q9BV19 199 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 MOV10Q9HCE1 1003 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SUCOQ9UBS9 1254 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 GTF2IRD1Q9UHL9 959 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 FRMD4BQ9Y2L6 1034 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 COL1A2P08123 1366 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C1orf232A0A0U1RR37 186 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SFI1A8K8P3 1242 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TRIM49D1C9J1S8 452 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 KBTBD13C9JR72 458 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 I3L4J1 428 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 COPEO14579 308 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TRIM24O15164 1050 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 B4GALT3O60512 393 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 MTRF1O75570 445 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C22orf31O95567 290 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CFHP08603 1231 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TGFB3P10600 412 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 GRK2P25098 689 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ACVR2AP27037 513 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CD68P34810 354 aaPredicted RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 GJC1P36383 396 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ELK3P41970 407 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ALDH7A1P49419 539 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ACLYP53396 1101 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TUBA1BP68363 451 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CLCQ05315 142 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CTF1Q16619 201 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C2CD6Q53TS8 623 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 Q5BKY6 102 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 C6orf10Q5SRN2 563 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TTC39BQ5VTQ0 682 aaPredicted RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 RINT1Q6NUQ1 792 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 MFSD7Q6UXD7 560 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 TUBA1AQ71U36 451 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 PLPPR4Q7Z2D5 763 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 PIWIL3Q7Z3Z3 882 aaKnown RBP5.65□□□□□ -1.5
CSDE1-202ENST00000339438 NUDCD3Q8IVD9 361 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 PDPRQ8NCN5 879 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SUN5Q8TC36 379 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ZFP90Q8TF47 636 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ATL1Q8WXF7 558 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 CDRT15Q96T59 188 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 VN1R3Q9BXE9 311 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 GLT8D2Q9H1C3 349 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ABHD16BQ9H3Z7 469 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ANLNQ9NQW6 1124 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 ARMC1Q9NVT9 282 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 DDX56Q9NY93 547 aaKnown RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms