RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TFPTP0C1Z6 253 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 JUPP14923 745 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ADRA1DP25100 572 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CDC25CP30307 473 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GRK6P43250 576 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PRKAG1P54619 331 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CHRNB3Q05901 458 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PDIA2Q13087 525 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PTK6Q13882 451 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LPIN1Q14693 890 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SPDYAQ5MJ70 313 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RBM20Q5T481 1227 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 IDNKQ5T6J7 187 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PRR5LQ6MZQ0 368 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD26P1Q6NSI1 321 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 USP45Q70EL2 814 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GPR155Q7Z3F1 870 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SETD3Q86TU7 594 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 IQCKQ8N0W5 287 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UPF1Q92900 1129 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ERP27Q96DN0 273 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ACCSQ96QU6 501 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ENY2Q9NPA8 101 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SNX13Q9Y5W8 968 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF804BA4D1E1 1349 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 STX16-NPEPL1H3BU86 382 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SRP72O76094 671 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 F9P00740 461 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 HBQ1P09105 142 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GSPT1P15170 499 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ITIH1P19827 911 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GRK4P32298 578 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UGT1A5P35504 534 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AGFG1P52594 562 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RAB15P59190 212 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RPS15P62841 145 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 POU5F1Q01860 360 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ROR2Q01974 943 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BNIP1Q12981 228 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RCAN2Q14206 197 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TIGD5Q53EQ6 642 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SAMD14Q8IZD0 417 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF321PQ8N8H1 164 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GALNT6Q8NCL4 622 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BBS1Q8NFJ9 593 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ETNPPLQ8TBG4 499 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BLOC1S5Q8TDH9 187 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 C22orf15Q8WYQ4 148 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ITFG2Q969R8 447 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MSANTD3Q96H12 275 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PTCHD1Q96NR3 888 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PHB2Q99623 299 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SENP6Q9GZR1 1112 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 HMGXB4Q9UGU5 601 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MRPS23Q9Y3D9 190 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3DA0A087WVF3 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3IA0A087WXS9 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3EA0A087X179 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3KA0A087X1G2 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3FA6NER0 549 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC72A6NJI9 287 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM114B3SHH9 223 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3LB9A6J9 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 C9IYK1 514 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 M0R036 132 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SLC33A1O00400 549 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AIM2O14862 343 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SCGNO76038 276 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3HP0C7X1 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EPB42P16452 691 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MAOAP21397 527 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FGFR2P21802 821 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ATP5A1P25705 553 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EPHX2P34913 555 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GJA9P57773 515 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RBBP4Q09028 425 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LMAN2Q12907 356 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MPPED2Q15777 294 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3GQ6DHY5 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3CQ6IPX1 549 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FOXR2Q6PJQ5 311 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BNC2Q6ZN30 1099 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D3Q8IZP1 549 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GUF1Q8N442 669 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GDPD5Q8WTR4 605 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GAL3ST3Q96A11 431 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RADILQ96JH8 1075 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CIPCQ9C0C6 399 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UGGT2Q9NYU1 1516 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 METP08581 1390 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EFCAB10A6NFE3 127 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 F5H5T6 163 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ATG12O94817 140 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 HOXB7P09629 217 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 BMP7P18075 431 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TXKP42681 527 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EPHA5P54756 1037 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TFAMQ00059 246 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC63Q05C16 580 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CDKAL1Q5VV42 579 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms