RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 MYO1FO00160 1098 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ARVCFO00192 962 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 SOCS6O14544 535 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 DNALI1O14645 258 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 HAT1O14929 419 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 LSM1O15116 133 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 RRP8O43159 456 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 CYTH3O43739 400 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 PEX1O43933 1283 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CBFA2T3O75081 653 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ATP6V1G1O75348 118 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 GCATO75600 419 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CTAG2O75638 210 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CBR3O75828 277 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 PSMD10O75832 226 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 KCNK5O95279 499 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 PDGFBP01127 241 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 OPN1LWP04000 364 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TP53P04637 393 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 LIPFP07098 398 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TUBBP07437 444 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 RETP07949 1114 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 MMP2P08253 660 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ITGA2BP08514 1039 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 GSTM1P09488 218 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CNPP09543 421 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 ARP10275 920 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CLUP10909 449 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ALADP13716 330 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 POU2F1P14859 743 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ETS1P14921 441 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 BRAFP15056 766 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ANPEPP15144 967 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 GCFC2P16383 781 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 CKMT2P17540 419 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CPN2P22792 545 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 EDNRBP24530 442 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 PTPN3P26045 913 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 U2AF2P26368 475 aaKnown RBP eCLIP3.08□□□□□ -1.92
VIM-210ENST00000637053 PCSK1P29120 753 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 THBS2P35442 1172 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CETN2P41208 172 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 FNTAP49354 379 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TUFMP49411 452 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 AARSP49588 968 aaKnown RBP eCLIP3.08□□□□□ -1.92
VIM-210ENST00000637053 HARS2P49590 506 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 NPY4RP50391 375 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 MAP2K6P52564 334 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ALDH18A1P54886 795 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 GFRA1P56159 465 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 NANOS3P60323 173 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 UBE2HP62256 183 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TUBB4BP68371 445 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZNF177Q13360 481 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 DCTN2Q13561 401 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 RAPSNQ13702 412 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TUBB2AQ13885 445 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CBFBQ13951 182 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 USP10Q14694 798 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 GPR162Q16538 588 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 PRSS53Q2L4Q9 553 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 Q4G0T1 1027 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 LRRC23Q53EV4 343 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 C9orf152Q5JTZ5 239 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 EFHC1Q5JVL4 640 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TEX35Q5T0J7 233 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 FAM69AQ5T7M9 428 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ATAD3BQ5T9A4 648 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CACHD1Q5VU97 1274 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TBC1D9BQ66K14 1250 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ANKRD40Q6AI12 368 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 USP17L6PQ6QN14 398 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 KCNT2Q6UVM3 1135 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 MFSD7Q6UXD7 560 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZNF813Q6ZN06 617 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 USP53Q70EK8 1073 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 UNC13DQ70J99 1090 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZNF771Q7L3S4 317 aaPredicted RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 VASH2Q86V25 355 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 FAM124AQ86V42 546 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 VPS36Q86VN1 386 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TPRA1Q86W33 373 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZDHHC17Q8IUH5 632 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ITPRIPQ8IWB1 547 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZC3H7AQ8IWR0 971 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 REXO1L1PQ8IX06 675 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 DDIASQ8IXT1 998 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 SYCE1Q8N0S2 351 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 SIX6OS1Q8N1H7 587 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZNF610Q8N9Z0 462 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CCDC63Q8NA47 563 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 TXNDC5Q8NBS9 432 aaKnown RBP3.08□□□□□ -1.92
VIM-210ENST00000637053 BVESQ8NE79 360 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 OR1N1Q8NGS0 311 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CAGE1Q8TC20 777 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 METTL6Q8TCB7 284 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CALML6Q8TD86 181 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 CSGALNACT1Q8TDX6 532 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 IGDCC4Q8TDY8 1250 aa3.08□□□□□ -1.92
VIM-210ENST00000637053 ZNF483Q8TF39 744 aaPredicted RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms