RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CYP4B1P13584 511 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 SSTR2P30874 369 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 GPR12P47775 334 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF132P52740 706 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 KRTAP10-3P60369 221 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 TRIM60Q495X7 471 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 ATPAF1Q5TC12 328 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM72AQ5TYM5 149 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM72DQ6L9T8 149 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 FAM72BQ86X60 149 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 GALNT15Q8N3T1 639 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 OR2C3Q8N628 320 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 SCAIQ8N9R8 606 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 STT3BQ8TCJ2 826 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 ATOH1Q92858 354 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-208ENST00000625916 ARRDC3Q96B67 414 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 PIGSQ96S52 555 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 MSTO1Q9BUK6 570 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 NAA15Q9BXJ9 866 aaKnown RBP3.02□□□□□ -1.93
SCN1A-208ENST00000625916 STK33Q9BYT3 514 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 GFRA4Q9GZZ7 299 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 SLC22A11Q9NSA0 550 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 LRFN1Q9P244 771 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 UPB1Q9UBR1 384 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 PHTF1Q9UMS5 762 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 TCF19Q9Y242 345 aa3.02□□□□□ -1.93
SCN1A-208ENST00000625916 A0A1B0GU03 582 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 TARSL2A2RTX5 802 aaKnown RBP3.01□□□□□ -1.93
SCN1A-208ENST00000625916 APAF1O14727 1248 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 RASA4O43374 803 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SLC22A3O75751 556 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 VNN2O95498 520 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 CBX6O95503 412 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 CETPP11597 493 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 LYL1P12980 280 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 RPS6KA2Q15349 733 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 FCN2Q15485 313 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 LONRF1Q17RB8 773 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SETMARQ53H47 684 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-208ENST00000625916 DCAF6Q58WW2 860 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 LCE3CQ5T5A8 94 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 TBC1D9BQ66K14 1250 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 PLA2G4FQ68DD2 849 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SLC26A9Q7LBE3 791 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 DGLUCYQ7Z3D6 616 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 GALNT7Q86SF2 657 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 MYPOPQ86VE0 399 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-208ENST00000625916 CCAR1Q8IX12 1150 aaKnown RBP3.01□□□□□ -1.93
SCN1A-208ENST00000625916 OR1N1Q8NGS0 311 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SLC2A12Q8TD20 617 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 TRIB2Q92519 343 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 RSC1A1Q92681 617 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SARGQ9BW04 601 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 CLPBQ9H078 707 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF334Q9HCZ1 680 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-208ENST00000625916 SMARCAL1Q9NZC9 954 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 KLQ9UEF7 1012 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 BAG5Q9UL15 447 aa3.01□□□□□ -1.93
SCN1A-208ENST00000625916 hDV102S1A0JD36 115 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 AQP12BA6NM10 295 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 HNRNPRO43390 633 aaKnown RBP3□□□□□ -1.93
SCN1A-208ENST00000625916 KDM4BO94953 1096 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 TFRCP02786 760 aaKnown RBP3□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF883P0CG24 379 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 RNF224P0DH78 156 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 DCTDP32321 178 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 CDKN1AP38936 164 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 LIFRP42702 1097 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 CLCN3P51790 818 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 RPS6KA3P51812 740 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 ZBTB17Q13105 803 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 SFR1Q86XK3 245 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 EPHX4Q8IUS5 362 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 BRSK2Q8IWQ3 736 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 AADATQ8N5Z0 425 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF441Q8N8Z8 693 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 KBTBD3Q8NAB2 608 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 KIAA1191Q96A73 305 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 MMTAG2Q9BU76 263 aaKnown RBP3□□□□□ -1.93
SCN1A-208ENST00000625916 MVB12BQ9H7P6 319 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 EBF2Q9HAK2 575 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 GRHL1Q9NZI5 618 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 OR6C3Q9NZP0 311 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 SNX9Q9Y5X1 595 aa3□□□□□ -1.93
SCN1A-208ENST00000625916 IGKV3D-15A0A087WSY6 115 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 C16orf97H3BN30 126 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE7O76087 117 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 AMBPP02760 352 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE12FP0CL80 117 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE12GP0CL81 117 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE12IP0CL82 117 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GYS1P13807 737 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 MYF6P23409 242 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 CDK7P50613 346 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 FAM27E3Q08E93 113 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE1Q13065 139 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 GAGE4Q13068 117 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 CAPSQ13938 189 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 FAM69BQ5VUD6 431 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 NFRKBQ6P4R8 1299 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms