RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NR2C2P49116 596 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 ESRRGP62508 458 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 PRKAA1Q13131 559 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 TRIM25Q14258 630 aaKnown RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 SPANXN3Q5MJ09 141 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 HMBOX1Q6NT76 420 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 CBR4Q8N4T8 237 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 NAT16Q8N8M0 369 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 SMYD1Q8NB12 490 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 RNF139Q8WU17 664 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 FBRSL1Q9HCM7 1045 aaKnown RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 PCDHGA7Q9Y5G6 932 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 ATE1O95260 518 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 MCF2P10911 925 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 NUMBP49757 651 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 GJA9P57773 515 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 CHSY3Q70JA7 882 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 PLPPR4Q7Z2D5 763 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 EXT2Q93063 718 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 SLCO4A1Q96BD0 722 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 ISOC1Q96CN7 298 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 OSBPL6Q9BZF3 934 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 SELENONQ9NZV5 590 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 GIMAP2Q9UG22 337 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 KCNH4Q9UQ05 1017 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 CEP350Q5VT06 3117 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 ZCWPW2A0A1B0GU75 182 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FAM72CH0Y354 149 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 CD247P20963 164 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 SLC7A2P52569 658 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 MBTD1Q05BQ5 628 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 BNIP3Q12983 259 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FASTKQ14296 549 aaKnown RBP18.56■□□□□ 0.56
UPF1-210ENST00000600689 POU6F1Q14863 301 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FAM72AQ5TYM5 149 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FAM72DQ6L9T8 149 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 TMEM26Q6ZUK4 368 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FAM72BQ86X60 149 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 DLG3Q92796 817 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 FBXL20Q96IG2 436 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 LRCH3Q96II8 777 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 CELF6Q96J87 481 aaKnown RBP18.56■□□□□ 0.56
UPF1-210ENST00000600689 ATXN3LQ9H3M9 355 aa18.56■□□□□ 0.56
UPF1-210ENST00000600689 IL18RAPO95256 599 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 MLNP12872 115 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 LMO2P25791 158 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 ZNF618Q5T7W0 954 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 C9orf131Q5VYM1 1079 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 ELMSAN1Q6PJG2 1045 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 C4orf22Q6V702 233 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 TNFRSF12AQ9NP84 129 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 PNPLA3Q9NST1 481 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 HEATR9A2RTY3 570 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 BTBD19C9JJ37 291 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 YBX3P16989 372 aaKnown RBP eCLIP18.55■□□□□ 0.561e-6■■■■□ 22
UPF1-210ENST00000600689 PROZP22891 400 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 YWHAQP27348 245 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 RBP5P82980 135 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 PLCL1Q15111 1095 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 C16orf87Q6PH81 154 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 CNSTQ6PJW8 725 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 SLC35F5Q8WV83 523 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 C18orf25Q96B23 403 aaPredicted RBP18.55■□□□□ 0.56
UPF1-210ENST00000600689 OSBPL11Q9BXB4 747 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 CLK4Q9HAZ1 481 aaKnown RBP18.55■□□□□ 0.56
UPF1-210ENST00000600689 CYP3A43Q9HB55 503 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 SPON1Q9HCB6 807 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 NR4A1P22736 598 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 SULT2A1Q06520 285 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 FGD3Q5JSP0 725 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 LDLRAP1Q5SW96 308 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 CLEC6AQ6EIG7 209 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 ZYG11AQ6WRX3 759 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 C2orf40Q9H1Z8 148 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 FZD8Q9H461 694 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 POMKQ9H5K3 350 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 PIF1Q9H611 641 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 PLGRKTQ9HBL7 147 aa18.55■□□□□ 0.56
UPF1-210ENST00000600689 PAIP2BQ9ULR5 123 aaKnown RBP18.55■□□□□ 0.56
UPF1-210ENST00000600689 M0QYT0 321 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 DDHD2O94830 711 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 MPOP05164 745 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 ZNF286BP0CG31 522 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 COL6A2P12110 1019 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 NDUFV1P49821 464 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 PPIL2Q13356 520 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 REP15Q6BDI9 236 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 CARM1Q86X55 608 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 CEP97Q8IW35 865 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 CXorf38Q8TB03 319 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 CNDP1Q96KN2 507 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 SMARCAD1Q9H4L7 1026 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 MRASO14807 208 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 INSRRP14616 1297 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 ARF4P18085 180 aaPredicted RBP18.54■□□□□ 0.56
UPF1-210ENST00000600689 NFKB1P19838 968 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 PRKCQQ04759 706 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 CSHL1Q14406 222 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 ARMCX2Q7L311 632 aa18.54■□□□□ 0.56
UPF1-210ENST00000600689 SPPL2CQ8IUH8 684 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms