RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FAM183BPQ6ZVS7 135 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 PARS2Q7L3T8 475 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 IRF2BP1Q8IU81 584 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 RBFAQ8N0V3 343 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 TPCN2Q8NHX9 752 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SHC3Q92529 594 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SMARCE1Q969G3 411 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 RNF34Q969K3 372 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 TBATAQ96M53 351 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 TIGD1Q96MW7 591 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 HEPHQ9BQS7 1158 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 C2orf49Q9BVC5 232 aaPredicted RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 GTPBP4Q9BZE4 634 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 TKTL2Q9H0I9 626 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 MUC3BQ9H195 1237 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 MPP6Q9NZW5 540 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 COX16Q9P0S2 106 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 IL36AQ9UHA7 158 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 AJAP1Q9UKB5 411 aaPredicted RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 KIF26BQ2KJY2 2108 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 C16orf96A6NNT2 1141 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 FOXN3O00409 490 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 TERTO14746 1132 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 YY2O15391 372 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TSPAN6O43657 245 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 DAB1O75553 588 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TCEA3O75764 348 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TNFSF15O95150 251 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 SMC2O95347 1197 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CELA2BP08218 269 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 ITIH2P19823 946 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 RBMS1P29558 406 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 GKP32189 559 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CDH5P33151 784 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 GABRB2P47870 512 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 SERPINH1P50454 418 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 CSRP3P50461 194 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CCNHP51946 323 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 ADKP55263 362 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 STX17P56962 302 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 SRSF6Q13247 344 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 C1orf61Q13536 156 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 PDE1CQ14123 709 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 MORC3Q14149 939 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 NR0B2Q15466 257 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TGIF1Q15583 401 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TRIM65Q6PJ69 517 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CRTC1Q6UUV9 634 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 XKR5Q6UX68 686 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 ZNF783Q6ZMS7 281 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CCDC81Q6ZN84 652 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 RBM44Q6ZP01 1051 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 NYAP1Q6ZVC0 841 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 ENOSF1Q7L5Y1 443 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 PTAR1Q7Z6K3 402 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 TFAP2DQ7Z6R9 452 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 B3GNT8Q7Z7M8 397 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 PARGQ86W56 976 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 PASD1Q8IV76 773 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 PCDH20Q8N6Y1 951 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 C1orf131Q8NDD1 294 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 DENND6BQ8NEG7 585 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 WDR36Q8NI36 951 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 GRIN3AQ8TCU5 1115 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 LMX1AQ8TE12 382 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 NELFBQ8WX92 580 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 FUBP1Q96AE4 644 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 ISG20Q96AZ6 181 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 CCDC97Q96F63 343 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 LIN37Q96GY3 246 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 CCDC114Q96M63 670 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CCNL2Q96S94 520 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 CRACR2AQ9BSW2 395 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 SRRTQ9BXP5 876 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 MAGEB5Q9BZ81 275 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 CEP44Q9C0F1 390 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 WDCPQ9H6R7 721 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 SIX2Q9NPC8 291 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 DYRK4Q9NR20 520 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 MBNL1Q9NR56 388 aaKnown RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 STARD5Q9NSY2 213 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 NDFIP2Q9NV92 336 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 RRN3Q9NYV6 651 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 NCKIPSDQ9NZQ3 722 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 IL17BQ9UHF5 180 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 GGT7Q9UJ14 662 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 RABGEF1Q9UJ41 708 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 ACSL6Q9UKU0 697 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 ATXN7L1Q9ULK2 861 aaPredicted RBP6.22□□□□□ -1.41
VRK3-220ENST00000600259 PCDHGA7Q9Y5G6 932 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.22□□□□□ -1.41
VRK3-220ENST00000600259 LRRK2Q5S007 2527 aa6.22□□□□□ -1.41
VRK3-220ENST00000600259 TRPM6Q9BX84 2022 aa6.21□□□□□ -1.41
VRK3-220ENST00000600259 CCDC187A0A096LP49 1063 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 CXorf51AA0A1B0GTR3 108 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 A0A1W2PQM1 296 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 FPGTO14772 594 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 MUSKO15146 869 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 SUV39H1O43463 412 aa6.21□□□□□ -1.42
VRK3-220ENST00000600259 SLC28A2O43868 658 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms