RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FBXL19Q6PCT2 694 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 MCOLN2Q8IZK6 566 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 RYBPQ8N488 228 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-209ENST00000582653 BAP1Q92560 729 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 FEM1CQ96JP0 617 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 MAGEH1Q9H213 219 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 ZDHHC6Q9H6R6 413 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 CAAP1Q9H8G2 361 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 RAMP2O60895 175 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 SDC3O75056 442 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 HOXB3P14651 431 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 TNFAIP3P21580 790 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 DGKAP23743 735 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 ACP1P24666 158 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 ITGB7P26010 798 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 ETFBP38117 255 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 NEK3P51956 506 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 CLDN2P57739 230 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 OGDHQ02218 1023 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 TARDBPQ13148 414 aaKnown RBP eCLIP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 POLD3Q15054 466 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 PROX2Q3B8N5 592 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 TMEM259Q4ZIN3 620 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 DNAAF5Q86Y56 855 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 DCP2Q8IU60 420 aaKnown RBP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 NETO2Q8NC67 525 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 IFT43Q96FT9 208 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 BPIFA3Q9BQP9 254 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 SYT11Q9BT88 431 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 SLC17A9Q9BYT1 436 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 NOL6Q9H6R4 1146 aaKnown RBP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 FZD10Q9ULW2 581 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 HPCAL4Q9UM19 191 aa20.82■□□□□ 0.92
SHMT1-209ENST00000582653 GOLGA4Q13439 2230 aaKnown RBP20.82■□□□□ 0.92
SHMT1-209ENST00000582653 A0A087WV48 116 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 ANKRD62A6NC57 917 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 TRIM38O00635 465 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 SIGLEC6O43699 453 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 KDELR3O43731 214 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 AP1G1O43747 822 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 CREB3O43889 395 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 PAK4O96013 591 aaPredicted RBP20.81■□□□□ 0.92
SHMT1-209ENST00000582653 CCDC172P0C7W6 258 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 ADRB3P13945 408 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 EPHB2P29323 1055 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 RPS21P63220 83 aaKnown RBP20.81■□□□□ 0.92
SHMT1-209ENST00000582653 MAPK8IP2Q13387 824 aaPredicted RBP20.81■□□□□ 0.92
SHMT1-209ENST00000582653 EFHC2Q5JST6 749 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 CAVIN1Q6NZI2 390 aaKnown RBP20.81■□□□□ 0.92
SHMT1-209ENST00000582653 DCUN1D2Q6PH85 259 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 PARS2Q7L3T8 475 aaKnown RBP20.81■□□□□ 0.92
SHMT1-209ENST00000582653 ABI3BPQ7Z7G0 1075 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 PDZD3Q86UT5 571 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 ZNF354CQ86Y25 554 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 OR13H1Q8NG92 308 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 VOPP1Q96AW1 172 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 LRIG1Q96JA1 1093 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 BMFQ96LC9 184 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 CNPY3Q9BT09 278 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 KLC2Q9H0B6 622 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 FADS3Q9Y5Q0 445 aa20.81■□□□□ 0.92
SHMT1-209ENST00000582653 KNTC1P50748 2209 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 LRRC53A6NM62 1247 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 SMTNL1A8MU46 457 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 CLDN6P56747 220 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 GEMIN4P57678 1058 aaKnown RBP20.8■□□□□ 0.92
SHMT1-209ENST00000582653 E2F1Q01094 437 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 FGL2Q14314 439 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 ATXN7L2Q5T6C5 722 aaPredicted RBP20.8■□□□□ 0.92
SHMT1-209ENST00000582653 HES3Q5TGS1 186 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 KIAA1161Q6NSJ0 714 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 GCNT7Q6ZNI0 430 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 Q6ZSR6 202 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 ZSCAN30Q86W11 494 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 RTL3Q8N8U3 475 aaKnown RBP20.8■□□□□ 0.92
SHMT1-209ENST00000582653 RFFLQ8WZ73 363 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 NAP1L5Q96NT1 182 aaPredicted RBP20.8■□□□□ 0.92
SHMT1-209ENST00000582653 CALN1Q9BXU9 219 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 NRSN2Q9GZP1 204 aa20.8■□□□□ 0.92
SHMT1-209ENST00000582653 KRIT1O00522 736 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 ATMINO43313 823 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-209ENST00000582653 BUB1O43683 1085 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 RTP5Q14D33 572 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 HS1BP3Q53T59 392 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 OR2AP1Q8NGE2 309 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 OR4C6Q8NH72 309 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 NXPE2Q96DL1 559 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 LENG8Q96PV6 779 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-209ENST00000582653 HAUS4Q9H6D7 363 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 GPATCH2LQ9NWQ4 482 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 UCKL1Q9NWZ5 548 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 MYO6Q9UM54 1294 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 ITPR1Q14643 2758 aa20.79■□□□□ 0.92
SHMT1-209ENST00000582653 ARID1BQ8NFD5 2236 aaPredicted RBP20.78■□□□□ 0.92
SHMT1-209ENST00000582653 URB1O60287 2271 aaKnown RBP20.78■□□□□ 0.92
SHMT1-209ENST00000582653 NEMP2A6NFY4 417 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 C16orf96A6NNT2 1141 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 A6NNZ2 444 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 TSPAN6O43657 245 aa20.78■□□□□ 0.92
SHMT1-209ENST00000582653 PIAS2O75928 621 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms