RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SYNJ2BP-COX16A0A087WUM0 186 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 A0A1B0GVL5 298 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 IGLON5A6NGN9 336 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 ZNF891A8MT65 544 aaPredicted RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 O00370 1275 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SPINT1O43278 529 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 MTSS1O43312 755 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 LEFTY1O75610 366 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 ENDOD1O94919 500 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 ZNF202O95125 648 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SRCP12931 536 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 PPP1R2P41236 205 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 CENPCQ03188 943 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 ADAM9Q13443 819 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 ARHGEF7Q14155 803 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 FOXD4L6Q3SYB3 417 aaPredicted RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 LACTB2Q53H82 288 aaPredicted RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 COBLL1Q53SF7 1204 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 LVRNQ6Q4G3 990 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 LCLAT1Q6UWP7 414 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 FOXD4L3Q6VB84 417 aaPredicted RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 KRBA2Q6ZNG9 492 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 RD3Q7Z3Z2 195 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 TAC4Q86UU9 113 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 GKN2Q86XP6 184 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 HID1Q8IV36 788 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 EFCAB3Q8N7B9 438 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 TEX19Q8NA77 164 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 KYQ8NBH2 561 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 PCDH19Q8TAB3 1148 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 GPBAR1Q8TDU6 330 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SLC35F5Q8WV83 523 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SEMA4DQ92854 862 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 HSFY1Q96LI6 401 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 TBATAQ96M53 351 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 LENG8Q96PV6 779 aaPredicted RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 GSDMAQ96QA5 445 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 HAPLN3Q96S86 360 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 C1QTNF7Q9BXJ2 289 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 RMND1Q9NWS8 449 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 COX16Q9P0S2 106 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SERTAD1Q9UHV2 236 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 RABGEF1Q9UJ41 708 aa11.29□□□□□ -0.6
VPS53-207ENST00000570510 SPTBN1Q01082 2364 aaKnown RBP11.28□□□□□ -0.6
VPS53-207ENST00000570510 A0A1W2PQM1 296 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 C9orf172C9J069 976 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 TSPAN6O43657 245 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 KLRC4O43908 158 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CLDN11O75508 207 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CNTN5O94779 1100 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 TRUB2O95900 331 aaKnown RBP11.28□□□□□ -0.6
VPS53-207ENST00000570510 MT-CO1P00395 513 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 KRT7P08729 469 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 RRM1P23921 792 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CCR1P32246 355 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 ETV5P41161 510 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 NDUFA8P51970 172 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 RIPPLY3P57055 190 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 YPEL5P62699 121 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 KLRB1Q12918 225 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CUL2Q13617 745 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 STILQ15468 1287 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 MAP9Q49MG5 647 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 TCERG1LQ5VWI1 586 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CXorf57Q6NSI4 855 aaKnown RBP11.28□□□□□ -0.6
VPS53-207ENST00000570510 FOXR2Q6PJQ5 311 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CLEC17AQ6ZS10 378 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 VPS36Q86VN1 386 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 GRAMD1CQ8IYS0 662 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CHST14Q8NCH0 376 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 KIAA0895Q8NCT3 520 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CCDC112Q8NEF3 446 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 DENND6BQ8NEG7 585 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 SSC4DQ8WTU2 575 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 MIB2Q96AX9 1013 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 EEF2KMTQ96G04 330 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 CLPBQ9H078 707 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 TNKS2Q9H2K2 1166 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 FAM204AQ9H8W3 233 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 TRAF3IP3Q9Y228 551 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 HS3ST2Q9Y278 367 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 FADS3Q9Y5Q0 445 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 RNF215Q9Y6U7 377 aa11.28□□□□□ -0.6
VPS53-207ENST00000570510 ZFC3H1O60293 1989 aaKnown RBP11.28□□□□□ -0.6
VPS53-207ENST00000570510 A1L4Q6 167 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 K7ERQ8 282 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 CAPN5O15484 640 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 ZW10O43264 779 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 SMC2O95347 1197 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 PRKAR1AP10644 381 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 TBXAS1P24557 533 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 ITGB7P26010 798 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 HTR1BP28222 390 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 L1CAMP32004 1257 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 EIF4A3P38919 411 aaKnown RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 NOP2P46087 812 aaKnown RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 CLCN6P51797 869 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 MLLT10P55197 1068 aa11.27□□□□□ -0.61
VPS53-207ENST00000570510 MCCD1P59942 119 aaPredicted RBP11.27□□□□□ -0.61
VPS53-207ENST00000570510 PFN3P60673 137 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms