RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GBA3Q9H227 469 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ACSS3Q9H6R3 686 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 C8orf33Q9H7E9 229 aaPredicted RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 LRRC40Q9H9A6 602 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SP110Q9HB58 689 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 TRPC7Q9HCX4 862 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SENP1Q9P0U3 644 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SAMD15Q9P1V8 674 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 LGALS13Q9UHV8 139 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 RABGEF1Q9UJ41 708 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 LSM7Q9UK45 103 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 NDRG2Q9UN36 371 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 NEU3Q9UQ49 428 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 CHMP2BQ9UQN3 213 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ACTL7BQ9Y614 415 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 MAD1L1Q9Y6D9 718 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 PIAS3Q9Y6X2 628 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 IQANK1A0A1B0GTG1 560 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 GOLGA6L7A0A1B0GV03 622 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 SOBPA7XYQ1 873 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CACNG3O60359 315 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 STC2O76061 302 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CNTN5O94779 1100 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 POLBP06746 335 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 KRT15P19012 456 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 NFKB1P19838 968 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CD72P21854 359 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 TARSP26639 723 aaKnown RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 WEE1P30291 646 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CORO1AP31146 461 aaKnown RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 ETFBP38117 255 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 MAGEA3P43357 314 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 ATP1A2P50993 1020 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 GEMP55040 296 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 ZNF177Q13360 481 aaPredicted RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 ALFQ53S48 1182 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 TNFAIP8L3Q5GJ75 292 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 STXBP5Q5T5C0 1151 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 TMCO4Q5TGY1 634 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CASC4Q6P4E1 433 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CAPN12Q6ZSI9 719 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 TFAP2DQ7Z6R9 452 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CCDC117Q8IWD4 279 aaPredicted RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 CELF5Q8N6W0 485 aaKnown RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 MAB21L3Q8N8X9 362 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 GSDMBQ8TAX9 411 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 USP33Q8TEY7 942 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 FAM3CQ92520 227 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 MAML1Q92585 1016 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CDKL2Q92772 493 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 STAMBPL1Q96FJ0 436 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CFAP36Q96G28 342 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 SIGLEC10Q96LC7 697 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 XPO6Q96QU8 1125 aaKnown RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 IER2Q9BTL4 223 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 CEP41Q9BYV8 373 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 RNF38Q9H0F5 515 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 KIF9Q9HAQ2 790 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 GLOD4Q9HC38 313 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 GKN1Q9NS71 199 aa9.08□□□□□ -0.96
VPS39-207ENST00000563692 PSMC3IPQ9P2W1 217 aaPredicted RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 AGO1Q9UL18 857 aaKnown RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 PTPRZ1P23471 2315 aaPredicted RBP9.08□□□□□ -0.96
VPS39-207ENST00000563692 NOTCH4Q99466 2003 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 TRAV19A0A0A6YYK7 116 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 C2orf78A6NCI8 922 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 NRG2O14511 850 aaPredicted RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 BANF1O75531 89 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 INHBAP08476 426 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 PGAM1P18669 254 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 CD68P34810 354 aaPredicted RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 MDH1P40925 334 aaKnown RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 RPS9P46781 194 aaKnown RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 SESN2P58004 480 aaPredicted RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 GNGT1P63211 74 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ITKQ08881 620 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 FCHO2Q0JRZ9 810 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 CDH17Q12864 832 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ZBTB17Q13105 803 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 SERINC3Q13530 473 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 LRRC32Q14392 662 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 TMED2Q15363 201 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 UBAP2Q5T6F2 1119 aaKnown RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 ARMC3Q5W041 872 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 NADSYN1Q6IA69 706 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ADGRD1Q6QNK2 874 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 POTEHQ6S545 545 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 LEKR1Q6ZMV7 388 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ARHGAP36Q6ZRI8 547 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 CHST9Q7L1S5 443 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 SETD3Q86TU7 594 aaPredicted RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 EXOC3L1Q86VI1 746 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 CMTM8Q8IZV2 173 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ARL14EPQ8N8R7 260 aaPredicted RBP9.07□□□□□ -0.96
VPS39-207ENST00000563692 CLDN23Q96B33 292 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 CENPTQ96BT3 561 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 ZNF599Q96NL3 588 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 SELENOSQ9BQE4 189 aa9.07□□□□□ -0.96
VPS39-207ENST00000563692 SLC46A2Q9BY10 475 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms