RNA–Protein interactions for RNA: ENST00000561059.5

PSME1-208, Transcript of proteasome activator subunit 1, human

TSL 2

Gene PSME1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSME1-208	ENST00000561059	RFFL	Q8WZ73	363 aa		13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	ARHGEF2	Q92974	986 aa	Known RBP	13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	CEP44	Q9C0F1	390 aa		13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	NUP62CL	Q9H1M0	184 aa		13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.63	□□□□□ -0.23
PSME1-208	ENST00000561059		U3KQA8	63 aa		13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	HELZ2	Q9BYK8	2649 aa	Known RBP	13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	SETX	Q7Z333	2677 aa	Known RBP	13.63	□□□□□ -0.23
PSME1-208	ENST00000561059	MYLK	Q15746	1914 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	CPED1	A4D0V7	1026 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	RRP8	O43159	456 aa	Known RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	CKMT1A	P12532	417 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	ADRA1B	P35368	520 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	CDKN3	Q16667	212 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	DEFB133	Q30KQ1	61 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	MANEAL	Q5VSG8	457 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	KYAT3	Q6YP21	454 aa	Known RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	ZNF783	Q6ZMS7	281 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	NLRP14	Q86W24	1093 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	ZNF354C	Q86Y25	554 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	RBFA	Q8N0V3	343 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	PYROXD2	Q8N2H3	581 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	ZNF548	Q8NEK5	533 aa	Predicted RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	IFI44	Q8TCB0	444 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	FGF11	Q92914	225 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	VOPP1	Q96AW1	172 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	FEM1C	Q96JP0	617 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	KLHL32	Q96NJ5	620 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	FCRL3	Q96P31	734 aa	Predicted RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	PCDHB18P	Q96TA0	734 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	KLF6	Q99612	283 aa	Predicted RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	KLC2	Q9H0B6	622 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	TCEAL2	Q9H3H9	227 aa	Predicted RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	PRORY	Q9H606	182 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	NLGN3	Q9NZ94	848 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	IPO11	Q9UI26	975 aa	Known RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	NEU3	Q9UQ49	428 aa		13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	TDRD6	O60522	2096 aa	Known RBP	13.62	□□□□□ -0.23
PSME1-208	ENST00000561059	PTPRQ	Q9UMZ3	2332 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	C2CD4B	A6NLJ0	364 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SCAMP1	O15126	338 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	USP12	O75317	370 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	CS	O75390	466 aa	Known RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	LRIG2	O94898	1065 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	CYP1A1	P04798	512 aa	Predicted RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	PLEK	P08567	350 aa	Predicted RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	ALPPL2	P10696	532 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	MMP8	P22894	467 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SDC4	P31431	198 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	HDAC4	P56524	1084 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	E2F1	Q01094	437 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	CDR2	Q01850	454 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SLC20A2	Q08357	652 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SGCG	Q13326	291 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	C1orf61	Q13536	156 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	KRT31	Q15323	416 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	TBC1D25	Q3MII6	688 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	KIAA1161	Q6NSJ0	714 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	GUSBP11	Q6P575	273 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SNIP1	Q8TAD8	396 aa	Known RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	MAPK15	Q8TD08	544 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	LMX1A	Q8TE12	382 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	FAM172A	Q8WUF8	416 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	BAP1	Q92560	729 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	CHMP5	Q9NZZ3	219 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	PPARGC1A	Q9UBK2	798 aa	Known RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	DACH1	Q9UI36	760 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	PNMA8B	Q9ULN7	279 aa	Predicted RBP	13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	HS3ST3A1	Q9Y663	406 aa		13.61	□□□□□ -0.23
PSME1-208	ENST00000561059	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	PMS2P1	A4D2B8	440 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	FPGT	O14772	594 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	BUB1	O43683	1085 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	MMP20	O60882	483 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	RAMP2	O60895	175 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	CSF2	P04141	144 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	NME1	P15531	152 aa	Known RBP	13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	RHOQ	P17081	205 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	JUND	P17535	347 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	TGM2	P21980	687 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	RFC1	P35251	1148 aa	Predicted RBP	13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	SOX5	P35711	763 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	HNRNPK	P61978	463 aa	Known RBP eCLIP	13.6	□□□□□ -0.23	5e-7	■■□□□ 13.1
PSME1-208	ENST00000561059	CXADR	P78310	365 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	GABRE	P78334	506 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	TLE3	Q04726	772 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	PTP4A2	Q12974	167 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	EIF2B5	Q13144	721 aa	Known RBP	13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	MYLK3	Q32MK0	819 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	ARL13B	Q3SXY8	428 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	ZNF805	Q5CZA5	627 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	CDCP2	Q5VXM1	449 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	NYAP1	Q6ZVC0	841 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	VPS36	Q86VN1	386 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	PARG	Q86W56	976 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	SPACA3	Q8IXA5	215 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	TBC1D31	Q96DN5	1066 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	EXOC2	Q96KP1	924 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	LGMN	Q99538	433 aa		13.6	□□□□□ -0.23
PSME1-208	ENST00000561059	C1QTNF2	Q9BXJ5	285 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms