RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RNF135Q8IUD6 432 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ST13P4Q8IZP2 240 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TXNDC5Q8NBS9 432 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 GPR78Q96P69 363 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PPP1R10Q96QC0 940 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 GAD1Q99259 594 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 NDNQ99608 321 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 OSBPL2Q9H1P3 480 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ABHD16BQ9H3Z7 469 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CYP4F12Q9HCS2 524 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CLIC5Q9NZA1 410 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 NUDT5Q9UKK9 219 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 COPG1Q9Y678 874 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 DOCK4Q8N1I0 1966 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 FAM95CA0A1B0GW59 222 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CASTOR2A6NHX0 329 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 DNAJA2O60884 412 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PMPCBO75439 489 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 KCNA5P22460 613 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PMLP29590 882 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PPARGP37231 505 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SLC1A2P43004 574 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PLK1P53350 603 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TAS2R39P59534 338 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ADAM17P78536 824 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CNGA3Q16281 694 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SH2D4BQ5SQS7 431 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RBM20Q5T481 1227 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 OLFML2BQ68BL8 750 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ITPRIPL1Q6GPH6 555 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CNSTQ6PJW8 725 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 GALNT4Q8N4A0 578 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PCDH20Q8N6Y1 951 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 KDM1BQ8NB78 822 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SCAMP5Q8TAC9 235 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 HASPINQ8TF76 798 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ZFAND2BQ8WV99 257 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RNF34Q969K3 372 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SLC10A4Q96EP9 437 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CNDP1Q96KN2 507 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 EPAS1Q99814 870 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PKP2Q99959 881 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 FICDQ9BVA6 458 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 KIFC1Q9BW19 673 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 WDR41Q9HAD4 459 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PRDM16Q9HAZ2 1276 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CNGB3Q9NQW8 809 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RIMS3Q9UJD0 308 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 APPL1Q9UKG1 709 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TRHDEQ9UKU6 1024 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 NEU3Q9UQ49 428 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CDYLQ9Y232 598 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ACOT9Q9Y305 439 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 A0A1B0GTW7 788 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 MAGEB16A2A368 324 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TCAF2A6NFQ2 919 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ERI2A8K979 691 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 KCNU1A8MYU2 1149 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 NCAM2O15394 837 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 MSI1O43347 362 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CABYRO75952 493 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 DDHD2O94830 711 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 MT-CO1P00395 513 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 BDNFP23560 247 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 LRPAP1P30533 357 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ARCN1P48444 511 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CXCR3P49682 368 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CHN2P52757 468 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RAB10P61026 200 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CDKL1Q00532 357 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PRKAA1Q13131 559 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PDAP1Q13442 181 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SLC12A1Q13621 1099 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 GRB14Q14449 540 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PPP1R3AQ16821 1122 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ARL13BQ3SXY8 428 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RAB41Q5JT25 222 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 C6orf52Q5T4I8 152 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 AP1ARQ63HQ0 302 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 IL31Q6EBC2 164 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 NAPEPLDQ6IQ20 393 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 DENND5AQ6IQ26 1287 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ARHGAP12Q8IWW6 846 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 RP9Q8TA86 221 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 HMGCLL1Q8TB92 370 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 HEXDCQ8WVB3 486 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 SREK1Q8WXA9 508 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 NMD3Q96D46 503 aaKnown RBP7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ELMO2Q96JJ3 720 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 MS4A4AQ96JQ5 239 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CNBD2Q96M20 576 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TMEM209Q96SK2 561 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TBL1YQ9BQ87 522 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CENPKQ9BS16 269 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 DNAI2Q9GZS0 605 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 PCDHAC1Q9H158 963 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 VCX3BQ9H321 246 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 POMKQ9H5K3 350 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 OCEL1Q9H607 264 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 ZBTB26Q9HCK0 441 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms