RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZNF398Q8TD17 642 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 AGAP2Q99490 1192 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 HDAC3O15379 428 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ME2P23368 584 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 MPSTP25325 297 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 PBX3P40426 434 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 OLIG2Q13516 323 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 AASDHQ4L235 1098 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 TTC7BQ86TV6 843 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SLCO2A1Q92959 643 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 UROC1Q96N76 676 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 PEBP4Q96S96 227 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 BCO2Q9BYV7 579 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 COPS7BQ9H9Q2 264 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 PIGVQ9NUD9 493 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 EIF3LQ9Y262 564 aaKnown RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 MFHAS1Q9Y4C4 1052 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 MPP1Q00013 466 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 RHBDF2Q6PJF5 856 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CLEC20AQ6ZU45 233 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 B3GALT6Q96L58 329 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ZMAT2Q96NC0 199 aaKnown RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 SEMA6AQ9H2E6 1030 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CROTQ9UKG9 612 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CHKBQ9Y259 395 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CXorf49A8MYA2 514 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 INPP4BO15327 924 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SYNCRIPO60506 623 aaKnown RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 GCATO75600 419 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ATP5F1P24539 256 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 BNIP1Q12981 228 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 FBXO48Q5FWF7 155 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SDE2Q6IQ49 451 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 STRA6Q9BX79 667 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SLC4A5Q9BY07 1137 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ZNF358Q9NW07 568 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 RCOR3Q9P2K3 495 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 DNMT3LQ9UJW3 386 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ADAM28Q9UKQ2 775 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 PEX11AO75192 247 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SMNDC1O75940 238 aaKnown RBP eCLIP16.45■□□□□ 0.221e-5■■□□□ 11.9
CUX1-213ENST00000549414 SNAI1O95863 264 aaPredicted RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 HDCP19113 662 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 PTPN3P26045 913 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CCNG1P51959 295 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SMAD3P84022 425 aaKnown RBP16.45■□□□□ 0.22
CUX1-213ENST00000549414 GRM3Q14832 879 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 SLC30A9Q6PML9 568 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 ZBTB49Q6ZSB9 765 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 JADE3Q92613 823 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 WDR41Q9HAD4 459 aa16.45■□□□□ 0.22
CUX1-213ENST00000549414 CCDC85CA6NKD9 419 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 EVPLLA8MZ36 301 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 C9IYK1 514 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CABYRO75952 493 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 COX4I1P13073 169 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CTPS1P17812 591 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 HALP42357 657 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 GJA9P57773 515 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 BRMS1LQ5PSV4 323 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 C11orf96Q7Z7L8 435 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 FAM228AQ86W67 206 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 BTRCQ9Y297 605 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 HBS1LQ9Y450 684 aaKnown RBP16.44■□□□□ 0.22
CUX1-213ENST00000549414 CLUHO75153 1309 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CHD4Q14839 1912 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 PSMD12O00232 456 aaPredicted RBP16.44■□□□□ 0.22
CUX1-213ENST00000549414 AP2A1O95782 977 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CACNA2D1P54289 1103 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CCDC142Q17RM4 750 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CACHD1Q5VU97 1274 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 TMEM110Q86TL2 294 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 OR6Y1Q8NGX8 325 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 RHOJQ9H4E5 214 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 TMEM216Q9P0N5 145 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 FGFR3P22607 806 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CHRNA4P43681 627 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 CDK18Q07002 472 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 BCL2L1Q07817 233 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 DPYSL2Q16555 572 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 POM121L1PQ3SYA9 428 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 ARMC12Q5T9G4 340 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 ESRP1Q6NXG1 681 aaKnown RBP16.44■□□□□ 0.22
CUX1-213ENST00000549414 TTC33Q6PID6 262 aaPredicted RBP16.44■□□□□ 0.22
CUX1-213ENST00000549414 OLFML1Q6UWY5 402 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 PIGWQ7Z7B1 504 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 WDTC1Q8N5D0 677 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 GSTCDQ8NEC7 633 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 HGH1Q9BTY7 390 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 FZD10Q9ULW2 581 aa16.44■□□□□ 0.22
CUX1-213ENST00000549414 BIRC5O15392 142 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 LZTS3O60299 673 aaPredicted RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 NMBRP28336 390 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 CRHR1P34998 444 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SKIV2L2P42285 1042 aaKnown RBP16.43■□□□□ 0.22
CUX1-213ENST00000549414 GPX6P59796 221 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 DSC2Q02487 901 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 SLC24A5Q71RS6 500 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 RCN3Q96D15 328 aa16.43■□□□□ 0.22
CUX1-213ENST00000549414 CDK5RAP1Q96SZ6 601 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms