RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TMEM5Q9Y2B1 443 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 PASKQ96RG2 1323 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 A0A1W2PQ09 198 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 BTBD18B2RXH4 712 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 NPIPB11E5RHQ5 1161 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 NPIPB8E9PQR5 432 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 UBE2Q2LH0YL09 131 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 MSI1O43347 362 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 NEURL1O76050 574 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 BEST1O76090 585 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 PLAUP00749 431 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CHRM5P08912 532 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 CYP2A6P11509 494 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 ZNF8P17098 575 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 GABRB1P18505 474 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 TACR3P29371 465 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 DPP6P42658 865 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CYP2J2P51589 502 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CACNA2D1P54289 1103 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 HDAC4P56524 1084 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CLDN2P57739 230 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SLC18A2Q05940 514 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CSTF3Q12996 717 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 GSTA3Q16772 222 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 PROSER3Q2NL68 480 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SYTL3Q4VX76 610 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 FAM133BQ5BKY9 247 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 PLEKHS1Q5SXH7 462 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 ZNF362Q5T0B9 420 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 C10orf76Q5T2E6 689 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 MFSD4BQ5TF39 518 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SLC30A6Q6NXT4 461 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 RPUSD3Q6P087 351 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 FBXO42Q6P3S6 717 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 KLHL35Q6PF15 583 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CHST9Q7L1S5 443 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 KRT74Q7RTS7 529 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 WDR5BQ86VZ2 330 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 DHX40Q8IX18 779 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 ADGRF2Q8IZF7 708 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SCML4Q8N228 414 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 C17orf53Q8N3J3 647 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 OR4N2Q8NGD1 307 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 NEK9Q8TD19 979 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 NOC3LQ8WTT2 800 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 TMEM170AQ8WVE7 144 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 PSPC1Q8WXF1 523 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 GTF3C6Q969F1 213 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SARAFQ96BY9 339 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 PABPC5Q96DU9 382 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 MMABQ96EY8 250 aaPredicted RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 FEM1CQ96JP0 617 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CMTM3Q96MX0 182 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 IFT27Q9BW83 186 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 AP1M1Q9BXS5 423 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.15□□□□□ -1.91
CD44-234ENST00000531873 KLK15Q9H2R5 256 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 HIPK3Q9H422 1215 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 PLEKHA4Q9H4M7 779 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CPNE5Q9HCH3 593 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 SPATS2LQ9NUQ6 558 aaKnown RBP3.15□□□□□ -1.91
CD44-234ENST00000531873 BABAM1Q9NWV8 329 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 ASB6Q9NWX5 421 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 CTNNAL1Q9UBT7 734 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 DHDHQ9UQ10 334 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 TNFSF13BQ9Y275 285 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 MST1RQ04912 1400 aa3.15□□□□□ -1.91
CD44-234ENST00000531873 TRBV5-7A0A0A0MS05 114 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 A0A1W2PRQ8 180 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 ARHGAP10A1A4S6 786 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 TMEM247A6NEH6 219 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 MYO1GB0I1T2 1018 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 SMIM22K7EJ46 135 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 INPPL1O15357 1258 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 ADAM20O43506 726 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 TSPAN9O75954 239 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 IL1AP01583 271 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 TUBBP07437 444 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 CLTBP09497 229 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 PROZP22891 400 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 GCH1P30793 250 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 CDAP32320 146 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 RYKP34925 604 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 NNMTP40261 264 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 SKIV2L2P42285 1042 aaKnown RBP3.14□□□□□ -1.91
CD44-234ENST00000531873 PIP4K2AP48426 406 aaPredicted RBP3.14□□□□□ -1.91
CD44-234ENST00000531873 F2RL1P55085 397 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 CDH8P55286 799 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 SOX10P56693 466 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 NIPAL4Q0D2K0 466 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 FRG1Q14331 258 aaKnown RBP3.14□□□□□ -1.91
CD44-234ENST00000531873 GALNT3Q14435 633 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 FGFBP1Q14512 234 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 TAF11Q15544 211 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 ASTE1Q2TB18 679 aaPredicted RBP3.14□□□□□ -1.91
CD44-234ENST00000531873 EDRF1Q3B7T1 1238 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 DPCR1Q3MIW9 517 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 CXorf66Q5JRM2 361 aaPredicted RBP3.14□□□□□ -1.91
CD44-234ENST00000531873 RAB41Q5JT25 222 aa3.14□□□□□ -1.91
CD44-234ENST00000531873 SPECC1Q5M775 1068 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms