RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 SIX6OS1Q8N1H7 587 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 SLC4A11Q8NBS3 891 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 PCDH19Q8TAB3 1148 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 BTN2A2Q8WVV5 523 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 ERCC4Q92889 916 aaPredicted RBP8.41□□□□□ -1.06
CD44-232ENST00000531118 AZIN2Q96A70 460 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 TMEM159Q96B96 161 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 CATSPER2Q96P56 530 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 DNAI2Q9GZS0 605 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 TNMDQ9H2S6 317 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 LRRC4Q9HBW1 653 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 SIRPGQ9P1W8 387 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 CGNQ9P2M7 1197 aaKnown RBP8.41□□□□□ -1.06
CD44-232ENST00000531118 IPO11Q9UI26 975 aaKnown RBP8.41□□□□□ -1.06
CD44-232ENST00000531118 SLC25A13Q9UJS0 675 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 PNMA8BQ9ULN7 279 aaPredicted RBP8.41□□□□□ -1.06
CD44-232ENST00000531118 NAALADL1Q9UQQ1 740 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 TP53TG5Q9Y2B4 290 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 MED13LQ71F56 2210 aa8.41□□□□□ -1.06
CD44-232ENST00000531118 DUX1O43812 170 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 BNIP3LO60238 219 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 VPS4BO75351 444 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CNTN5O94779 1100 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ZNF18P17022 549 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 NR1D1P20393 614 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 TACR2P21452 398 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ITGB7P26010 798 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ZFP36L1Q07352 338 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 BST2Q10589 180 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 CDC20Q12834 499 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 SLC12A1Q13621 1099 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ACCSLQ4AC99 568 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 RAP1GAP2Q684P5 730 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ERN2Q76MJ5 926 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 TMPRSS9Q7Z410 1059 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 BRAPQ7Z569 592 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CHSY1Q86X52 802 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CCNJLQ8IV13 435 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 SLITRK4Q8IW52 837 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 SRRM1Q8IYB3 904 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 LGI2Q8N0V4 545 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 SCML4Q8N228 414 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ANKRD52Q8NB46 1076 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 GALNT11Q8NCW6 608 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 DENND6BQ8NEG7 585 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 TAS1R2Q8TE23 839 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 NKD1Q969G9 470 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 PMEPA1Q969W9 287 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ABHD17AQ96GS6 310 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 HEXIM2Q96MH2 286 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 SERPINB11Q96P15 392 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CMKLR1Q99788 373 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 B3GNT4Q9C0J1 378 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CLPBQ9H078 707 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 LRRN3Q9H3W5 708 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 ZNF395Q9H8N7 513 aaPredicted RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 DYRK4Q9NR20 520 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 CUEDC1Q9NWM3 386 aaPredicted RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 XPO7Q9UIA9 1087 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 TSPAN16Q9UKR8 245 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 VPS4AQ9UN37 437 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 PCDHGA11Q9Y5H2 935 aa8.4□□□□□ -1.06
CD44-232ENST00000531118 TNRC6AQ8NDV7 1962 aaKnown RBP8.4□□□□□ -1.06
CD44-232ENST00000531118 ADGRG4Q8IZF6 3080 aa8.4□□□□□ -1.07
CD44-232ENST00000531118 NAV3Q8IVL0 2385 aa8.4□□□□□ -1.07
CD44-232ENST00000531118 CCDC168Q8NDH2 2452 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 TTLL8A6PVC2 850 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 RNF103O00237 685 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 FPGTO14772 594 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 SPTLC2O15270 562 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 CLDN1O95832 211 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 LTFP02788 710 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 TSHRP16473 764 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 GRNP28799 593 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 OAS2P29728 719 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 CHRNA3P32297 505 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 ARSDP51689 593 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 NEK3P51956 506 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 PLK1P53350 603 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 RAD23BP54727 409 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 PFN3P60673 137 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 RPS21P63220 83 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 CCDC15Q0P6D6 951 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 C16orf72Q14CZ0 275 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 DLG2Q15700 870 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 KRTAP21-3Q3LHN1 58 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 C1orf220Q5T0J3 134 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 C1QL3Q5VWW1 255 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 CXorf57Q6NSI4 855 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 CCAR2Q8N163 923 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 SH2D3CQ8N5H7 860 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 IL22RA1Q8N6P7 574 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 PDILTQ8N807 584 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 GRIN3AQ8TCU5 1115 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 GPBAR1Q8TDU6 330 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 DQX1Q8TE96 717 aaKnown RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 RNF34Q969K3 372 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 INSM2Q96T92 566 aaPredicted RBP8.39□□□□□ -1.07
CD44-232ENST00000531118 SLC17A9Q9BYT1 436 aa8.39□□□□□ -1.07
CD44-232ENST00000531118 CNGB3Q9NQW8 809 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms