RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ARHGEF26Q96DR7 871 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 GDAP1L1Q96MZ0 367 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 HAUS4Q9H6D7 363 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 CCDC86Q9H6F5 360 aaKnown RBP13.89□□□□□ -0.19
TCOF1-215ENST00000515516 FZD3Q9NPG1 666 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 KLHL11Q9NVR0 708 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 TAS2R14Q9NYV8 317 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 IPO11Q9UI26 975 aaKnown RBP13.89□□□□□ -0.19
TCOF1-215ENST00000515516 ZFR2Q9UPR6 939 aaKnown RBP13.89□□□□□ -0.19
TCOF1-215ENST00000515516 PCDHGA1Q9Y5H4 931 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 FADS3Q9Y5Q0 445 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 HS3ST3A1Q9Y663 406 aa13.89□□□□□ -0.19
TCOF1-215ENST00000515516 CEP295Q9C0D2 2601 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 SRRM3A6NNA2 597 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 C16orf96A6NNT2 1141 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 A6NNZ2 444 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 WASH4PA8MWX3 477 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 RASA4BC9J798 803 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 RNF103O00237 685 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 DAPK3O43293 454 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 RASA4O43374 803 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 RFPL3O75679 317 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 TMCC1O94876 653 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 IGSF6O95976 241 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 PAK4O96013 591 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 FTLP02792 175 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 UGT2B4P06133 528 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 GKP32189 559 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 CLDN2P57739 230 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 RHOAP61586 193 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 INO80DQ53TQ3 878 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 DHRS13Q6UX07 377 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 GDPD4Q6W3E5 623 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 PARS2Q7L3T8 475 aaKnown RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 PTAR1Q7Z6K3 402 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 TTC7BQ86TV6 843 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 TRIM11Q96F44 468 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 NCAPGQ9BPX3 1015 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 EDEM3Q9BZQ6 932 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 DHX35Q9H5Z1 703 aaKnown RBP13.88□□□□□ -0.19
TCOF1-215ENST00000515516 AIPL1Q9NZN9 384 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 NEU3Q9UQ49 428 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 PCNX2A6NKB5 2137 aa13.88□□□□□ -0.19
TCOF1-215ENST00000515516 A0A1B0GTH6 734 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 EIF3CLB5ME19 914 aaKnown RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 FPGTO14772 594 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 PRPSAP2O60256 369 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 SDC3O75056 442 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 ALPPL2P10696 532 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 GZMAP12544 262 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 JUPP14923 745 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 CKMT2P17540 419 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 XPAP23025 273 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 HNF1BP35680 557 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 DNAJC3Q13217 504 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 SERINC3Q13530 473 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 SMAD1Q15797 465 aaKnown RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 TMEM259Q4ZIN3 620 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 ATXN7L2Q5T6C5 722 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 ERMARDQ5T6L9 678 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 PLEKHA7Q6IQ23 1121 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 Q6ZSR6 202 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 TMPRSS12Q86WS5 348 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 UMODL1-AS1Q8N2C9 162 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 OR13H1Q8NG92 308 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 HMCESQ96FZ2 354 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 KLHL32Q96NJ5 620 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 NAP1L5Q96NT1 182 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 EIF3CQ99613 913 aaKnown RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 TTYH3Q9C0H2 523 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 MRPL47Q9HD33 250 aaKnown RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 CNOT8Q9UFF9 292 aaKnown RBP13.87□□□□□ -0.19
TCOF1-215ENST00000515516 PCSK1NQ9UHG2 260 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 AP4E1Q9UPM8 1137 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 SCINQ9Y6U3 715 aa13.87□□□□□ -0.19
TCOF1-215ENST00000515516 NEMP2A6NFY4 417 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 IGLON5A6NGN9 336 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 EEF2KO00418 725 aaKnown RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 ATMINO43313 823 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 MYBL1P10243 752 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 PRKCIP41743 596 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 RABIFP47224 123 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 NDST2P52849 883 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 OGDHQ02218 1023 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 ILKQ13418 452 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 NR1I3Q14994 352 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 CFAP58Q5T655 872 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 GCNT7Q6ZNI0 430 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 ZNF571Q7Z3V5 609 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 ABI3BPQ7Z7G0 1075 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 VPS36Q86VN1 386 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 CXorf40AQ8TE69 158 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 ZNF653Q96CK0 615 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 IFT43Q96FT9 208 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 LENG8Q96PV6 779 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 SYT11Q9BT88 431 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 C1QTNF7Q9BXJ2 289 aa13.86□□□□□ -0.19
TCOF1-215ENST00000515516 NOL6Q9H6R4 1146 aaKnown RBP13.86□□□□□ -0.19
TCOF1-215ENST00000515516 EVA1BQ9NVM1 165 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms