RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 JAG1P78504 1218 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 OTOP3Q7RTS5 596 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 C9orf16Q9BUW7 83 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 NIFKQ9BYG3 293 aaKnown RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 LGALS13Q9UHV8 139 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CLCN5P51795 746 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 EPHB3P54753 998 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 HSPA14Q0VDF9 509 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 KLF10Q13118 480 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 BFSP2Q13515 415 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ZNF621Q6ZSS3 439 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PIGWQ7Z7B1 504 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CCDC103Q8IW40 242 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 FAM9CQ8IZT9 166 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ZFYVE19Q96K21 471 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ZFRQ96KR1 1074 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 MRPL57Q9BQC6 102 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 C1orf50Q9BV19 199 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 DGCR6LQ9BY27 220 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PALMDQ9NP74 551 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 USE1Q9NZ43 259 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 A0A087WXM4 84 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PQBP1O60828 265 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 VNN1O95497 513 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 SLC7A2P52569 658 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 HPCAP84074 193 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CAMK2GQ13555 558 aaPredicted RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 MAPK11Q15759 364 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 KHDC1Q4VXA5 237 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 PGBD3Q8N328 593 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 GLIS1Q8NBF1 620 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 RHOJQ9H4E5 214 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ZFP14Q9HCL3 533 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 OPTCQ9UBM4 332 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CDV3Q9UKY7 258 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 TMCC3Q9ULS5 477 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PCDHGC3Q9UN70 934 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 MAFBQ9Y5Q3 323 aaPredicted RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 HOXA2O43364 376 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 NTRK1P04629 796 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 SEMA5AQ13591 1074 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PEX6Q13608 980 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CYP1B1Q16678 543 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 TEX44Q53QW1 395 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CAMK1DQ8IU85 385 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 RP9Q8TA86 221 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 PCDH19Q8TAB3 1148 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PLEKHO2Q8TD55 490 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 TPD52L3Q96J77 140 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 SERAC1Q96JX3 654 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 SPATA16Q9BXB7 569 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 FAM192AQ9GZU8 254 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 PRDM16Q9HAZ2 1276 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ARL15Q9NXU5 204 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 COPG2Q9UBF2 871 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ANAPC2Q9UJX6 822 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 TSC22D4Q9Y3Q8 395 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 SNED1Q8TER0 1413 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CAPN8A6NHC0 703 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ATG7O95352 703 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 GSTM1P09488 218 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 S100A3P33764 101 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 CRHR1P34998 444 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ATP5C1P36542 298 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 DGCR6Q14129 220 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 STXBP5Q5T5C0 1151 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 MARK2Q7KZI7 788 aaKnown RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 GPR142Q7Z601 462 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 ZNF467Q7Z7K2 595 aaPredicted RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 KCTD15Q96SI1 283 aaPredicted RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 PDZD7Q9H5P4 517 aa12.8□□□□□ -0.36
USP53-209ENST00000514665 COL1A1P02452 1464 aaPredicted RBP12.8□□□□□ -0.36
USP53-209ENST00000514665 LTN1O94822 1766 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 HOXB8P17481 243 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 ALDH9A1P49189 494 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ALDH6A1Q02252 535 aaKnown RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 BCL2L1Q07817 233 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 CCDC142Q17RM4 750 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 SLC10A6Q3KNW5 377 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ARMC12Q5T9G4 340 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 TPGS1Q6ZTW0 290 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 CACUL1Q86Y37 369 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 TMEM192Q8IY95 271 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 CCDC185Q8N715 623 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 AZIN2Q96A70 460 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ZYG11BQ9C0D3 744 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 CDH19Q9H159 772 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 OSGEPL1Q9H4B0 414 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 RIBC2Q9H4K1 309 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 ZNF214Q9UL59 606 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 VWA7Q9Y334 891 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 KLRG2A4D1S0 409 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 CCL22O00626 93 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 LDB1Q86U70 411 aaPredicted RBP12.79□□□□□ -0.36
USP53-209ENST00000514665 EID3Q8N140 333 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 SPATA22Q8NHS9 363 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 YME1L1Q96TA2 773 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 KLHL25Q9H0H3 589 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 SDCBP2Q9H190 292 aa12.79□□□□□ -0.36
USP53-209ENST00000514665 DPEP3Q9H4B8 488 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms