RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CR2P20023 1033 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 HLA-DPA1P20036 260 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 PSMA3P25788 255 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 GABRR2P28476 465 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 FOXN2P32314 431 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 SERPINH1P50454 418 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 CSRP3P50461 194 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 LIMK2P53671 638 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 OXCT1P55809 520 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 ERVFC1P60507 584 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 RPS24P62847 133 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 SMAD3P84022 425 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 OLIG2Q13516 323 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 LRRC14Q15048 493 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 QPCTQ16769 361 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UGP2Q16851 508 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 INO80DQ53TQ3 878 aaPredicted RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 CXorf57Q6NSI4 855 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 RFWD3Q6PCD5 774 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 FOXR1Q6PIV2 292 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 KYAT3Q6YP21 454 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 GAREM2Q75VX8 874 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 TMC7Q7Z402 723 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 GALNT7Q86SF2 657 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 LCA5Q86VQ0 697 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 KCNMB4Q86W47 210 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 RASSF3Q86WH2 238 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 TRIM42Q8IWZ5 723 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 CACNA2D3Q8IZS8 1091 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 PGBD5Q8N414 524 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 KIAA1958Q8N8K9 716 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 RAB3IL1Q8TBN0 382 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 SPPL3Q8TCT6 385 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 MGARPQ8TDB4 240 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 SCG3Q8WXD2 468 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 SPOCK2Q92563 424 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 PABPC5Q96DU9 382 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 SAMD11Q96NU1 681 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 TGS1Q96RS0 853 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 PLCD4Q9BRC7 762 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 FSD1LQ9BXM9 530 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UGT1A7Q9HAW7 530 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UGT1A10Q9HAW8 530 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UGT1A8Q9HAW9 530 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 NT5MQ9NPB1 228 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 CHRAC1Q9NRG0 131 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 UBP1Q9NZI7 540 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 DNMT3BQ9UBC3 853 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 DCDC2Q9UHG0 476 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 LSM7Q9UK45 103 aaKnown RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 COLQQ9Y215 455 aaPredicted RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 PLLPQ9Y342 182 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 STARD13Q9Y3M8 1113 aa8.48□□□□□ -1.05
RNF4-220ENST00000513578 ARIH1Q9Y4X5 557 aaPredicted RBP8.48□□□□□ -1.05
RNF4-220ENST00000513578 ATG2AQ2TAZ0 1938 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 TRAV19A0A0A6YYK7 116 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 A0A0D9SEW6 157 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 TYW5A2RUC4 315 aaKnown RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 MROH6A6NGR9 719 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 BIRC5O15392 142 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 TLL1O43897 1013 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 GLRA3O75311 464 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 PMPCBO75439 489 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 ZMPSTE24O75844 475 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 PIAS1O75925 651 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 LUC7L3O95232 432 aaKnown RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 MPOP05164 745 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 FGF1P05230 155 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 GSTA1P08263 222 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 HNRNPA1P09651 372 aaKnown RBP eCLIP8.47□□□□□ -1.05
RNF4-220ENST00000513578 ATXN1LP0C7T5 689 aaKnown RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 ERVK-10P10266 1014 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 TCF3P15923 654 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 TPH1P17752 444 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 NMBRP28336 390 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 CD86P42081 329 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 ARCN1P48444 511 aaKnown RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 CLCN4P51793 760 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 PLK1P53350 603 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 DSC2Q02487 901 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 ACVR1Q04771 509 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 NSUN2Q08J23 767 aaKnown RBP eCLIP8.47□□□□□ -1.05
RNF4-220ENST00000513578 ZNF235Q14590 738 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 IHHQ14623 411 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 SEPT7Q16181 437 aaKnown RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 KIAA0408Q6ZU52 694 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 CIR1Q86X95 450 aaPredicted RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 UNC5BQ8IZJ1 945 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 CFAP52Q8N1V2 620 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 ARL14EPQ8N8R7 260 aaPredicted RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 ANKS4BQ8N8V4 417 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 CCDC197Q8NCU1 140 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 OR7D4Q8NG98 312 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 OR52K2Q8NGK3 314 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 GABPB2Q8TAK5 448 aaPredicted RBP8.47□□□□□ -1.05
RNF4-220ENST00000513578 LRRC8CQ8TDW0 803 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 WBP2Q969T9 261 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 MFSD3Q96ES6 412 aa8.47□□□□□ -1.05
RNF4-220ENST00000513578 TMA16Q96EY4 203 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms