RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ARPINQ7Z6K5 226 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 OSCP1Q8WVF1 389 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 COG4Q9H9E3 785 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 CAB39LQ9H9S4 337 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 COMMD8Q9NX08 183 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 DTLQ9NZJ0 730 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MYH14Q7Z406 1995 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MYO5AQ9Y4I1 1855 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 PPP3CCP48454 512 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 NUMBP49757 651 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 XIAPP98170 497 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 CTBP1Q13363 440 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 C12orf65Q9H3J6 166 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MINDY3Q9H8M7 445 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 VPS45Q9NRW7 570 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SCN3BQ9NY72 215 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC45A1Q9Y2W3 748 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 STAU1O95793 577 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SNRPB2P08579 225 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 LRPAP1P30533 357 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 PKNOX1P55347 436 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TTC30AQ86WT1 665 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FNDC5Q8NAU1 212 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TWNKQ96RR1 684 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 ACBD6Q9BR61 282 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 NMRK1Q9NWW6 199 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 C6orf203Q9P0P8 240 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 ABCA3Q99758 1704 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TSPAN3O60637 253 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TM7SF2O76062 418 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 ENDOD1O94919 500 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 C2P06681 752 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FGFR1P11362 822 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 LBPP18428 481 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TFEBP19484 476 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 LMO2P25791 158 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 PTPN3P26045 913 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 PIK3R1P27986 724 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 BRCC3P46736 316 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 IL2P60568 153 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MRPS22P82650 360 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 INCA1Q0VD86 236 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 HIST2H2ACQ16777 129 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 HIST2H2AA3Q6FI13 130 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FBXW8Q8N3Y1 598 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 NDNQ99608 321 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 COPS7BQ9H9Q2 264 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 CNTN3Q9P232 1028 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FBXW11Q9UKB1 542 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM32AQ9Y421 112 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TNPO3Q9Y5L0 923 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MRPL42Q9Y6G3 142 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TAF1P21675 1872 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MYH4Q9Y623 1939 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 C5orf58C9J3I9 102 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TRIM38O00635 465 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FGF1P05230 155 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 WNT3AP56704 352 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 FOXD4Q12950 439 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 STXBP5Q5T5C0 1151 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 C6orf89Q6UWU4 347 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 GPSM1Q86YR5 675 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TAGAPQ8N103 731 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 TBC1D19Q8N5T2 526 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 RNF148Q8N7C7 305 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 NLGN2Q8NFZ4 835 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 OR9Q1Q8NGQ5 310 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 CASP10Q92851 521 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 VPS33AQ96AX1 596 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 HGH1Q9BTY7 390 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 ZNF556Q9HAH1 456 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SPAG4Q9NPE6 437 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 MAN1C1Q9NR34 630 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SFMBT1Q9UHJ3 866 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 LNPEPQ9UIQ6 1025 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 KRT6AP02538 564 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 KRT6BP04259 564 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PRDX6P30041 224 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 KRT6CP48668 564 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 DAOAP59103 153 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 GHRHRQ02643 423 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 IYDQ6PHW0 289 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PTGR2Q8N8N7 351 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PCED1BQ96HM7 432 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 NR1H4Q96RI1 486 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ACOX2Q99424 681 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PCYT2Q99447 389 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 TBC1D23Q9NUY8 699 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 UTP6Q9NYH9 597 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 MTF2Q9Y483 593 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 TCRBV7S3A2A0A539 114 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 OR6C75A6NL08 312 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CCNT2O60583 730 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC2A4P14672 509 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CES1P23141 567 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 NEK3P51956 506 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CLDN10P78369 228 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 PFKFB4Q16877 469 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 ZYG11AQ6WRX3 759 aa10.87□□□□□ -0.67
LIMCH1-205ENST00000503057 CRYBG2Q8N1P7 616 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms