RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 KDM3AQ9Y4C1 1321 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 NPIPB15A6NHN6 443 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 B4DLN1 442 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM232C9JQI7 657 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 GTPBP1O00178 669 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 CLIC1O00299 241 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 PRYO14603 147 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TNFSF14O43557 240 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 CCNT1O60563 726 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 EXOC3O60645 756 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 APEHP13798 732 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 CD72P21854 359 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 NFKBIAP25963 317 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 GSTM2P28161 218 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 HOXD13P35453 343 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 INHBEP58166 350 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 DGCR2P98153 550 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 NEXNQ0ZGT2 675 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 CUL4AQ13619 759 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 IL13RA2Q14627 380 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 ERCC6LQ2NKX8 1250 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 RILPL1Q5EBL4 403 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 LY6G5CQ5SRR4 150 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 MFSD4BQ5TF39 518 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 NAPEPLDQ6IQ20 393 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TOM1L2Q6ZVM7 507 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 RHOUQ7L0Q8 258 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM200AQ86VY9 491 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 ADGRF3Q8IZF5 1079 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 C2CD4CQ8TF44 421 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 CNOT9Q92600 299 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 SAAL1Q96ER3 474 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 C5orf34Q96MH7 638 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 THAP7Q9BT49 309 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 ABHD14AQ9BUJ0 271 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 NPLQ9BXD5 320 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 RNF26Q9BY78 433 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 FTOQ9C0B1 505 aaKnown RBP eCLIP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 SLC32A1Q9H598 525 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 EPHX3Q9H6B9 360 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TTC12Q9H892 705 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 ASNSD1Q9NWL6 643 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 TFCP2L1Q9NZI6 479 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 LRIT1Q9P2V4 623 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 ADD3Q9UEY8 706 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 OSGIN2Q9Y236 505 aa4.32□□□□□ -1.72
PTCD3-216ENST00000487043 FAM208AQ9UK61 1670 aaKnown RBP4.32□□□□□ -1.72
PTCD3-216ENST00000487043 COL5A2P05997 1499 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 DLG5Q8TDM6 1919 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 FNDC1Q4ZHG4 1894 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 SPATA31A6Q5VVP1 1343 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 RNF123Q5XPI4 1314 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 TEX13CA0A0J9YWL9 993 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CHL1O00533 1208 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CNTN5O94779 1100 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MLYCDO95822 493 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 PEX11BO96011 259 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 ADH4P08319 380 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 ELFN1P0C7U0 828 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 LAMP2P13473 410 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 COX7A2P14406 83 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 SFPQP23246 707 aaKnown RBP eCLIP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 PSMA4P25789 261 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 ABCD1P33897 745 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MCM7P33993 719 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 HSPA1LP34931 641 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 HOXD12P35452 270 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 GRIA3P42263 894 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CPA2P48052 419 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CTCFP49711 727 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CCT8P50990 548 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 RARSP54136 660 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MRPS35P82673 323 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 EFNB1P98172 346 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 PTPAQ15257 358 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 LSM12Q3MHD2 195 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 SLC9B1Q4ZJI4 515 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 AARS2Q5JTZ9 985 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 IGFL4Q6B9Z1 124 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 TMCO3Q6UWJ1 677 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 IKBIPQ70UQ0 350 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MCM10Q7L590 875 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 GALNT7Q86SF2 657 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MRGPREQ86SM8 312 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 TTC39CQ8N584 583 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 PLD5Q8N7P1 536 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 TERB1Q8NA31 727 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 ACTRT2Q8TDY3 377 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CACTINQ8WUQ7 758 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 RAB40AQ8WXH6 277 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 USP6NLQ92738 828 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF503Q96F45 646 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 KAZALD1Q96I82 304 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 FYTTD1Q96QD9 318 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 NR1H4Q96RI1 486 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MACROD1Q9BQ69 325 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 THUMPD2Q9BTF0 503 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 TRIM2Q9C040 744 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 SYNCQ9H7C4 482 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms