RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CTSO	P43234	321 aa	Predicted RBP	11.37	□□□□□ -0.59
APTX-223	ENST00000479656	SCNN1B	P51168	640 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	WNT3A	P56704	352 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	IFFO1	Q0D2I5	559 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	GRM2	Q14416	872 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	FUT11	Q495W5	492 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	CEP85L	Q5SZL2	805 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	LRIG3	Q6UXM1	1119 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	LINC00523	Q86TU6	105 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	SMRP1	Q8NCR6	262 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	FGF14	Q92915	247 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	E2F7	Q96AV8	911 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	TADA1	Q96BN2	335 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	LRRC39	Q96DD0	335 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	NSMCE3	Q96MG7	304 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	EBNA1BP2	Q99848	306 aa	Known RBP	11.37	□□□□□ -0.59
APTX-223	ENST00000479656	KXD1	Q9BQD3	176 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	TRIM56	Q9BRZ2	755 aa	Known RBP	11.37	□□□□□ -0.59
APTX-223	ENST00000479656	RPP25	Q9BUL9	199 aa	Known RBP	11.37	□□□□□ -0.59
APTX-223	ENST00000479656	SLC2A11	Q9BYW1	496 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	NOD2	Q9HC29	1040 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	FBXO10	Q9UK96	956 aa		11.37	□□□□□ -0.59
APTX-223	ENST00000479656	NFATC1	O95644	943 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SYF2	O95926	243 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ADH1C	P00326	375 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CP	P00450	1065 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CR2	P20023	1033 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SP100	P23497	879 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ZNF844	Q08AG5	666 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CDH17	Q12864	832 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CCDC85B	Q15834	202 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CERCAM	Q5T4B2	595 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ALG1L	Q6GMV1	187 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	DENND5A	Q6IQ26	1287 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CASC4	Q6P4E1	433 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	RANBP10	Q6VN20	620 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ADIPOR2	Q86V24	386 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	C12orf40	Q86WS4	652 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	YAF2	Q8IY57	180 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SLC25A41	Q8N5S1	370 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ZNF557	Q8N988	423 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	TTC8	Q8TAM2	541 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ATP2A3	Q93084	1043 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ELSPBP1	Q96BH3	223 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CFAP36	Q96G28	342 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	XPO6	Q96QU8	1125 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	FSD1L	Q9BXM9	530 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ECT2	Q9H8V3	914 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SCUBE2	Q9NQ36	999 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	HPS4	Q9NQG7	708 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	VPS45	Q9NRW7	570 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	HAUS2	Q9NVX0	235 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SYBU	Q9NX95	663 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	FAM53C	Q9NYF3	392 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	BFAR	Q9NZS9	450 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	LHX3	Q9UBR4	397 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	USP15	Q9Y4E8	981 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	C5orf42	Q9H799	3197 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	TLDC2	A0PJX2	215 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	INSIG1	O15503	277 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	HOXC11	O43248	304 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ATP9B	O43861	1147 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CISD3	P0C7P0	127 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	PSMC3	P17980	439 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CHRNA4	P43681	627 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SLC6A11	P48066	632 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	NPY2R	P49146	381 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	STK19	P49842	368 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SERPINH1	P50454	418 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	EIF3B	P55884	814 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	RHOA	P61586	193 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	SLC20A2	Q08357	652 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	FCHO2	Q0JRZ9	810 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	PDGFRL	Q15198	375 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	GEN1	Q17RS7	908 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	TMEM215	Q68D42	235 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	MTERF4	Q7Z6M4	381 aa	Known RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-223	ENST00000479656	ATP11C	Q8NB49	1132 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	MYLIP	Q8WY64	445 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	STAMBPL1	Q96FJ0	436 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	NUDCD1	Q96RS6	583 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	PLAC1	Q9HBJ0	212 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656	CD207	Q9UJ71	328 aa		11.36	□□□□□ -0.59
APTX-223	ENST00000479656		A0A087WUV0	522 aa	Predicted RBP	11.35	□□□□□ -0.59
APTX-223	ENST00000479656	SMIM23	A6NLE4	172 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656		H3BQF6	201 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	AP3B1	O00203	1094 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	OPA1	O60313	960 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	TULP3	O75386	442 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	SERPINF2	P08697	491 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	ABHD2	P08910	425 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	SRC	P12931	536 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	DGKG	P49619	791 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	GEMIN4	P57678	1058 aa	Known RBP	11.35	□□□□□ -0.59
APTX-223	ENST00000479656	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
APTX-223	ENST00000479656	GPS2	Q13227	327 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	LONRF1	Q17RB8	773 aa		11.35	□□□□□ -0.59
APTX-223	ENST00000479656	GAB4	Q2WGN9	574 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms