RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PLEKHH3Q7Z736 793 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 KCNMB4Q86W47 210 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 FAM72BQ86X60 149 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 SLC2A14Q8TDB8 520 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 FLRT1Q9NZU1 646 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 CDYLQ9Y232 598 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 NRP1O14786 923 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 HDAC3O15379 428 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 RECQL4O94761 1208 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF865P0CJ78 1059 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 TPSB2P20231 275 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 TPP2P29144 1249 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 HARS2P49590 506 aaKnown RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 SERPINB8P50452 374 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 CCR3P51677 355 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 ADIGQ0VDE8 80 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 TPSAB1Q15661 275 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF423Q2M1K9 1284 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 AGKQ53H12 422 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 NOTUMQ6P988 496 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 CLVS1Q8IUQ0 354 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 BTBD9Q96Q07 612 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 GCOM2Q9BZD3 368 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 C6orf203Q9P0P8 240 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 EGFL7Q9UHF1 273 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 E7ENX8 843 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 ZBTB24O43167 697 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 MPP1Q00013 466 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SOX4Q06945 474 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 DBN1Q16643 649 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 ANKDD1AQ495B1 522 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 FBXO48Q5FWF7 155 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 DUS1LQ6P1R4 473 aaKnown RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 FAM47BQ8NA70 645 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RNF169Q8NCN4 708 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 QKIQ96PU8 341 aaKnown RBP eCLIP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 OSMRQ99650 979 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RBBP8Q99708 897 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 EFCAB1Q9HAE3 211 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 XPR1Q9UBH6 696 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 TMCO1Q9UM00 188 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SMIM28A0A1B0GU29 152 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 ARHGAP10A1A4S6 786 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 GNAO1P09471 354 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 CNTFP26441 200 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 AXLP30530 894 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 CXCR3P49682 368 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 ENTPD1P49961 510 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 FKBP1BP68106 108 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SEPT6Q14141 434 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SYPL2Q5VXT5 272 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SPRYD7Q5W111 196 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RYBPQ8N488 228 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 MARVELD2Q8N4S9 558 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 NAT16Q8N8M0 369 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 ANKRD52Q8NB46 1076 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SPATA22Q8NHS9 363 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RIN3Q8TB24 985 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RNF139Q8WU17 664 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 NXNL1Q96CM4 212 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 TSPAN18Q96SJ8 248 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SOX17Q9H6I2 414 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 GIMAP2Q9UG22 337 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 RIMS3Q9UJD0 308 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 COPG1Q9Y678 874 aaKnown RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 C9IYK1 514 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 GPC4O75487 556 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 JCHAINP01591 159 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 FUT4P22083 530 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 GJA9P57773 515 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 FSTL5Q8N475 847 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-208ENST00000463007 BEST2Q8NFU1 509 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 NT5C3BQ969T7 300 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 SIK2Q9H0K1 926 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 AP4S1Q9Y587 144 aa12.59□□□□□ -0.39
HDAC4-208ENST00000463007 LAMA2P24043 3122 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 CDH2P19022 906 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 TKTP29401 623 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 PPARGP37231 505 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 CASP2P42575 452 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 NDST2P52849 883 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 DCTN2Q13561 401 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 SNX17Q15036 470 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 MAP7D1Q3KQU3 841 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 PIGGQ5H8A4 983 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 TIFABQ6ZNK6 161 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 OTOP3Q7RTS5 596 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 DPP9Q86TI2 863 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 LRRC43Q8N309 656 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 ARRDC4Q8NCT1 418 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 SMG8Q8ND04 991 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 SLC7A14Q8TBB6 771 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 ACMSDQ8TDX5 336 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 CPNE1Q99829 537 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 MRPS26Q9BYN8 205 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 MKS1Q9NXB0 559 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 UBQLN1Q9UMX0 589 aaKnown RBP12.58□□□□□ -0.4
HDAC4-208ENST00000463007 MATN2O00339 956 aa12.58□□□□□ -0.4
HDAC4-208ENST00000463007 EEF2KO00418 725 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms