RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PLCD3Q8N3E9 789 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 PGBD5Q8N414 524 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 PAF1Q8N7H5 531 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 TTC8Q8TAM2 541 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 PYROXD1Q8WU10 500 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 IFT43Q96FT9 208 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 OXNAD1Q96HP4 312 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ZNF419Q96HQ0 510 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 EXOC2Q96KP1 924 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 CIPCQ9C0C6 399 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 CDC42EP4Q9H3Q1 356 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 INTS6Q9UL03 887 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 ACTL7AQ9Y615 435 aa17.37■□□□□ 0.37
CCDC28B-202ENST00000421922 KIAA1549LQ6ZVL6 1849 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 ASLP04424 464 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 MAPK8P45983 427 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 SESN2P58004 480 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 ST8SIA6P61647 398 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 CDH17Q12864 832 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 ACCSLQ4AC99 568 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 FNBP1LQ5T0N5 605 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 CASC4Q6P4E1 433 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 NUDT18Q6ZVK8 323 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 ANKMY2Q8IV38 441 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 RYBPQ8N488 228 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 LRRC39Q96DD0 335 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 LMLNQ96KR4 655 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 C9orf72Q96LT7 481 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 GORASP1Q9BQQ3 440 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 PABPC3Q9H361 631 aaKnown RBP17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 BFARQ9NZS9 450 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 SAMD15Q9P1V8 674 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 SLC27A6Q9Y2P4 619 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 MAD1L1Q9Y6D9 718 aa17.36■□□□□ 0.37
CCDC28B-202ENST00000421922 C2CD4DB7Z1M9 353 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 INSIG1O15503 277 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 ATP8B1O43520 1251 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 USP12O75317 370 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 COL9A1P20849 921 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 PHBP35232 272 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 HSD17B3P37058 310 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 WNT3AP56704 352 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 SNRPD1P62314 119 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 IFFO1Q0D2I5 559 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 NIPAL4Q0D2K0 466 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 MTM1Q13496 603 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 SLC14A2Q15849 920 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 CCDC38Q502W7 563 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 RALGPS1Q5JS13 557 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 HP1BP3Q5SSJ5 553 aaPredicted RBP17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 KCTD11Q693B1 232 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 ALG1LQ6GMV1 187 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 CAND1Q86VP6 1230 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 C12orf40Q86WS4 652 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 RNF135Q8IUD6 432 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 RELL1Q8IUW5 271 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 PALM2Q8IXS6 379 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 FBXO36Q8NEA4 188 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 OR52K1Q8NGK4 314 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 UCMAQ8WVF2 138 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 RPL10LQ96L21 214 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 NUDCD1Q96RS6 583 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 APOL2Q9BQE5 337 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 PHF7Q9BWX1 381 aaPredicted RBP17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 TM6SF2Q9BZW4 377 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 VPS37BQ9H9H4 285 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 GTSE1Q9NYZ3 720 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 FBXO10Q9UK96 956 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 CHMP2BQ9UQN3 213 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 HS3ST2Q9Y278 367 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 TICRRQ7Z2Z1 1910 aa17.35■□□□□ 0.37
CCDC28B-202ENST00000421922 SDR42E2A6NKP2 422 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ANKRD36A6QL64 1941 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 E7ESA3 106 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ANHXE9PGG2 379 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 MUSKO15146 869 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ACSL3O95573 720 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 MT-CO1P00395 513 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 SRCP12931 536 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 CTSOP43234 321 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 RECQLP46063 649 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 STK19P49842 368 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 AP1S1P61966 158 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 FAM193AP78312 1265 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 SKOR1P84550 965 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 NSUN2Q08J23 767 aaKnown RBP eCLIP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 GPS2Q13227 327 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 EIF4HQ15056 248 aaKnown RBP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 GEN1Q17RS7 908 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 C22orf39Q6P5X5 142 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 PRPF39Q86UA1 669 aaKnown RBP17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ETFBKMTQ8IXQ9 262 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 SH2D3CQ8N5H7 860 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ARRDC2Q8TBH0 407 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 NXPE3Q969Y0 559 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 TTC17Q96AE7 1141 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 CFAP36Q96G28 342 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 TXLNGYQ9BZA5 131 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 CEP44Q9C0F1 390 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 SEMA4AQ9H3S1 761 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms